PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_775D5A865.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 71aa    MW: 7773.78 Da    PI: 6.5162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_775D5A865.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-061371655
                           HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +N+ +  Lr+l+P++   + ++ + a+i+  A++++k+L+
  Traes_6AL_775D5A865.1  1 MNEYLVVLRSLMPES---YVQRGDQASIVGGAIDFVKELE 37
                           8999***********...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.404136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-11158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-7141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MNEYLVVLRS LMPESYVQRG DQASIVGGAI DFVKELEQQL QSLEAQKRAL AHQQQQHKAG  60
RDAAPLPAGA S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575791e-85AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189025.14e-37transcription factor bHLH94-like
SwissprotO810376e-19BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A3B6NSI08e-41A0A3B6NSI0_WHEAT; Uncharacterized protein
STRINGTraes_6AL_775D5A865.16e-44(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.18e-15bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]