PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_72D2B7C35.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 276aa    MW: 30360.5 Da    PI: 9.2447
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_72D2B7C35.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.2e-332377155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+
  Traes_6AL_72D2B7C35.1 23 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 77
                           79****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7162080IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-322078IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-242378IPR006447Myb domain, plants
SuperFamilySSF466891.4E-162379IPR009057Homeodomain-like
PfamPF002498.4E-102576IPR001005SANT/Myb domain
PfamPF143798.7E-25121165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFEGMERAGY GVGAGVVLSR DPKPRLRWTP DLHERFVEAV TKLGGPDKAT PKSVLRLMGM  60
KGLTLYHLKS HLQKYRMGKQ SKKDTGFETN RAFAAQGISF SSAMPPNVPS AGNNTTGETP  120
LADALRYQIE VQRKLHEQLE VQKKLQMRIE AQGKYLQTIL EKAQKNLSYE AGGDATLETT  180
RSQLTDFNLA LSGFMDDATQ ACQQNGGELA KALSDDGLRA GNLGFQLYHG GEDVKCATDE  240
DLLLLDLNIK GGYDHRLSAH GMRRGAVDLA VGQHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-212379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569260.0AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14.
GenBankAK3660410.0AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170372.10.0myb family transcription factor PHL11-like
SwissprotC0SVS45e-65PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A3B6NSP00.0A0A3B6NSP0_WHEAT; Uncharacterized protein
TrEMBLA0A446VKB60.0A0A446VKB6_TRITD; Uncharacterized protein
STRINGTraes_6AL_72D2B7C35.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.17e-66G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]