PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_72D2B7C35.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 276aa MW: 30360.5 Da PI: 9.2447 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.2e-33 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+ Traes_6AL_72D2B7C35.1 23 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 77 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.716 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-32 | 20 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.4E-16 | 23 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.4E-10 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.7E-25 | 121 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MFEGMERAGY GVGAGVVLSR DPKPRLRWTP DLHERFVEAV TKLGGPDKAT PKSVLRLMGM 60 KGLTLYHLKS HLQKYRMGKQ SKKDTGFETN RAFAAQGISF SSAMPPNVPS AGNNTTGETP 120 LADALRYQIE VQRKLHEQLE VQKKLQMRIE AQGKYLQTIL EKAQKNLSYE AGGDATLETT 180 RSQLTDFNLA LSGFMDDATQ ACQQNGGELA KALSDDGLRA GNLGFQLYHG GEDVKCATDE 240 DLLLLDLNIK GGYDHRLSAH GMRRGAVDLA VGQHRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 23 | 79 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356926 | 0.0 | AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14. | |||
GenBank | AK366041 | 0.0 | AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170372.1 | 0.0 | myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 5e-65 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A3B6NSP0 | 0.0 | A0A3B6NSP0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VKB6 | 0.0 | A0A446VKB6_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_72D2B7C35.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 7e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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