PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_702DED986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 46aa MW: 4992.66 Da PI: 8.2575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.5e-07 | 26 | 45 | 1 | 20 |
TSSS-HHHHHHHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlG 20 rg+WT+eEd lv ++q+G Traes_6AL_702DED986.1 26 RGPWTAEEDMTLVAHIEQHG 45 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 17 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-5 | 20 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.979 | 21 | 46 | IPR017930 | Myb domain |
CDD | cd00167 | 0.00104 | 28 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 46 aa Download sequence Send to blast |
SAEKSRGVSK VAMGRSPCCD KTGIKRGPWT AEEDMTLVAH IEQHGH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN584645 | 5e-71 | JN584645.1 Triticum aestivum MYB33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198196.1 | 2e-17 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 3e-14 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A287UBD8 | 1e-17 | A0A287UBD8_HORVV; Uncharacterized protein | ||||
STRING | Traes_6AL_702DED986.1 | 1e-26 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 1e-15 | myb domain protein 16 |
Publications ? help Back to Top | |||
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