PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_6B7CBC837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 203aa    MW: 21385.1 Da    PI: 9.9666
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_6B7CBC837.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71e-34471388102
                    TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 
                             +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++  +a s sss+     +     
  Traes_6AL_6B7CBC837.1  47 VKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVssSAPSTSSSS-----Sfsyph 129
                            59********************************************************9999966632111111111.....111222 PP

                    TCP  89 ....kaaksaakskksqk 102
                                k         ++++
  Traes_6AL_6B7CBC837.1 130 tllgK---------RPRE 138
                            33331.........2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3247141IPR005333Transcription factor, TCP
PROSITE profilePS5136926.42847101IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTSHDIAAAS SPFHVYQQHL PMTMAPAAAS ADAGLAPAAS KKAGGSVKDR HSKVNGRGRR  60
VRMPIVCAAR VFQLTRELGL KSDGQTIEWL LRQAEPSILA ATGTGTTPAA FVSSSAPSTS  120
SSSSFSYPHT LLGKRPREEE NDAFGAGAAT SAFWAALQAP PRQDTWGFSP LDAQAAYMPM  180
AQVHHHHLNL VAALSGAARR AEE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00643PBMTransfer from BGIOSGA008683Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146556.11e-123transcription factor TCP7-like
SwissprotQ9FMX23e-39TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A3B6NRF11e-145A0A3B6NRF1_WHEAT; Uncharacterized protein
TrEMBLA0A446VHP51e-145A0A446VHP5_TRITD; Uncharacterized protein
STRINGTraes_6AL_6B7CBC837.11e-146(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-29TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]