PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_6B7CBC837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 203aa MW: 21385.1 Da PI: 9.9666 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.7 | 1e-34 | 47 | 138 | 8 | 102 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +a s sss+ + Traes_6AL_6B7CBC837.1 47 VKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVssSAPSTSSSS-----Sfsyph 129 59********************************************************9999966632111111111.....111222 PP TCP 89 ....kaaksaakskksqk 102 k ++++ Traes_6AL_6B7CBC837.1 130 tllgK---------RPRE 138 33331.........2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-32 | 47 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.428 | 47 | 101 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTSHDIAAAS SPFHVYQQHL PMTMAPAAAS ADAGLAPAAS KKAGGSVKDR HSKVNGRGRR 60 VRMPIVCAAR VFQLTRELGL KSDGQTIEWL LRQAEPSILA ATGTGTTPAA FVSSSAPSTS 120 SSSSFSYPHT LLGKRPREEE NDAFGAGAAT SAFWAALQAP PRQDTWGFSP LDAQAAYMPM 180 AQVHHHHLNL VAALSGAARR AEE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00643 | PBM | Transfer from BGIOSGA008683 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146556.1 | 1e-123 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-39 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A3B6NRF1 | 1e-145 | A0A3B6NRF1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VHP5 | 1e-145 | A0A446VHP5_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_6B7CBC837.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-29 | TCP family protein |
Publications ? help Back to Top | |||
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