PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_54D562BC2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 250aa    MW: 27383.5 Da    PI: 5.6379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_54D562BC2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd  lv  ++q+G  +W+  ++  g+ R++k+c++rw +yl
  Traes_6AL_54D562BC2.1 14 RGPWTAEEDMTLVAHIEQHGHSNWRVLPKQAGLLRCGKSCRLRWINYL 61
                           89******************************99************97 PP
2Myb_DNA-binding54.33.1e-1767110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T eE+e +++++++lG++ W+tIa++++ gRt++++k+ w++
  Traes_6AL_54D562BC2.1  67 RGNFTSEEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHT 110
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129414.253961IPR017930Myb domain
SuperFamilySSF466891.43E-3010108IPR009057Homeodomain-like
SMARTSM007177.8E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-141461IPR001005SANT/Myb domain
CDDcd001675.11E-111661No hitNo description
PROSITE profilePS5129426.01662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2665116IPR009057Homeodomain-like
SMARTSM007175.7E-1466114IPR001005SANT/Myb domain
PfamPF002493.8E-1567111IPR001005SANT/Myb domain
CDDcd001676.91E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVSAPCCEKM GLKRGPWTAE EDMTLVAHIE QHGHSNWRVL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSEEEEAIIQ LHAMLGNRWS TIAARLPGRT DNEIKNVWHT QLKKRLQSSS  120
KSSGQAAPKR KANKPAVAAS TLEDPTSDPV SAEQSLAMSP EQSLSTSSAT DYSMASSLEN  180
TGSSSSEEFQ IDDSFWSETL AMSVNSSGSG METSDTFGAD SASPSSSNNE MDFWVTLFMQ  240
AGDMHSLSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3304860.0KP330486.1 Triticum aestivum MYB transcription factor SM155-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169007.11e-162myb-related protein Myb4-like
SwissprotQ6K1S61e-103MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A446VGU70.0A0A446VGU7_TRITD; Uncharacterized protein
TrEMBLW5G7300.0W5G730_WHEAT; MYB transcription factor SM155-1
STRINGTraes_6AL_54D562BC2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-71myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]