PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_52FA7F228.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 69aa    MW: 7696.39 Da    PI: 7.9335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_52FA7F228.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-132967244
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                           r +h++ E+rRR +iN++++ Lr+llP++    ++K +Ka+ L
  Traes_6AL_52FA7F228.1 29 RSKHSATEQRRRTKINDRLDVLRDLLPNC----DQKRDKASFL 67
                           899*************************9....99****9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-132467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.55E-92567No hitNo description
Gene3DG3DSA:4.10.280.105.8E-152667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.3482769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-112967IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
DTDCCECSGS RAEGRSSGSS ADQDPSSPRS KHSATEQRRR TKINDRLDVL RDLLPNCDQK  60
RDKASFLLQ
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575992e-77AK357599.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155686.13e-33transcription factor BIM2-like isoform X1
RefseqXP_020155690.12e-33transcription factor BIM2-like isoform X2
SwissprotQ9LEZ36e-19BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A3B6NTX13e-40A0A3B6NTX1_WHEAT; Uncharacterized protein
TrEMBLA0A446VM533e-40A0A446VM53_TRITD; Uncharacterized protein
STRINGTraes_6AL_52FA7F228.17e-42(Triticum aestivum)
STRINGTraes_6DL_D38F3257B.23e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]