PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_52227091B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 327aa    MW: 36185.7 Da    PI: 5.6171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_52227091B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Traes_6AL_52227091B.1 14 KGPWTAEEDQKLTDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding58.51.5e-1867112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Traes_6AL_52227091B.1  67 RGKFTPEEEQTILQLHSVLGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.638961IPR017930Myb domain
SuperFamilySSF466894.3E-3311108IPR009057Homeodomain-like
SMARTSM007171.8E-151363IPR001005SANT/Myb domain
PfamPF002494.7E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-251568IPR009057Homeodomain-like
CDDcd001672.09E-121661No hitNo description
PROSITE profilePS5129428.38762116IPR017930Myb domain
SMARTSM007177.6E-1866114IPR001005SANT/Myb domain
PfamPF002491.5E-1767112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2969117IPR009057Homeodomain-like
CDDcd001678.50E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTAE EDQKLTDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TPEEEQTILQ LHSVLGNKWS AIAKHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DFFAALPQLI ALANLRQLVE QRPWDDQSAS QLQADAVQAA KLEYLQCLLQ  180
SAAAIATSPS SSSINTIPTD LEQIGLLSPS RMSSLSSLSS PRIMEGVNGH DLVTGQVPGI  240
QIPSSSFFEH EQAIINCTNQ NSDYSANSGE GEKLLLLSED SLPPLADFPT SNFGDACSTS  300
SCEAVGNSTQ LPIWSDSFYD EFMSEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-31121162105C-Myb DNA-Binding Domain
1msf_C5e-31121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171818.10.0transcription factor MYB39-like
SwissprotQ9S9Z21e-104MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3B6NUF40.0A0A3B6NUF4_WHEAT; Uncharacterized protein
TrEMBLA0A446VPA80.0A0A446VPA8_TRITD; Uncharacterized protein
STRINGTraes_6AL_52227091B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-103myb domain protein 93
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]