PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_4084532FC1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 277aa    MW: 30004.6 Da    PI: 6.0795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_4084532FC1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2292.2e-70227691374
                    GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                             l+f+++ta qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ 
  Traes_6AL_4084532FC1.1   2 LQFANFTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAAD 88 
                             89************988776699************************976544599******************************* PP

                    GRAS 172 lgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                             lg+pfefn++   +l+++++ eL  ++ +E +aV+l +          +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++f
  Traes_6AL_4084532FC1.1  89 LGIPFEFNAV---SLDAFSPAELISSTgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVVAMDYGADRADLPFSQHF 165
                             *********8...99*******9888889********9777665...55555....******************************* PP

                    GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                             l++++ ++ l+dsl+a  + +++ + k+E++l++++++++v  + +       ++ +Wr+ + +aGF+pvpls+ a++qa++ll++v
  Traes_6AL_4084532FC1.1 166 LHCFQSCMFLLDSLDAA-GIDADSACKIEKFLIQPRVEDAVLGRRKT-----DKAVSWRNVFAAAGFTPVPLSNLAEAQADCLLKRV 246
                             **************888.7899*******************987776.....7889******************************* PP

                    GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +++g++ve++  +l+l+W++ +LvsvSaWr
  Traes_6AL_4084532FC1.1 247 QVRGFHVEKRGVALTLYWQRGELVSVSAWR 276
                             *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.0381256IPR005202Transcription factor GRAS
PfamPF035147.7E-682276IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLQFANFTAT QALLDEIACS AASCIHVIDF DLGVGGQWAS FLQELAHRRG TGGVALPLLK  60
LTAFVSDASH HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS STGDEIVAVS  120
LPVGCSARAP PLAVILRLVK QLGPKIVVAM DYGADRADLP FSQHFLHCFQ SCMFLLDSLD  180
AAGIDADSAC KIEKFLIQPR VEDAVLGRRK TDKAVSWRNV FAAAGFTPVP LSNLAEAQAD  240
CLLKRVQVRG FHVEKRGVAL TLYWQRGELV SVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-25327691375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.10.0scarecrow-like protein 6
TrEMBLA0A446VIY10.0A0A446VIY1_TRITD; Uncharacterized protein
TrEMBLM8BWU00.0M8BWU0_AEGTA; Uncharacterized protein
STRINGTraes_6AL_4084532FC1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-76GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]