PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_3C182DED5.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 276aa MW: 30803.8 Da PI: 9.0185

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_3C182DED5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.7e-17	29	78	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ rg+W+AeIrdp + ++++lg+f +aeeAa+a++ +++++g Traes_6AL_3C182DED5.1 29 QFRGIRQRP-RGKWAAEIRDPI----KgAYVWLGTFNSAEEAARAYDVEARRIRG 78 69*****.8*****72....46**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.2E-29	29	87	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.812	29	86	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-20	29	87	IPR016177	DNA-binding domain
CDD	cd00018	7.79E-32	29	87	No hit	No description
SMART	SM00380	8.3E-34	29	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-8	30	41	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-10	30	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-8	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
FSQDDLSTRT SAGFDGPAQR PGKRKRKNQF RGIRQRPRGK WAAEIRDPIK GAYVWLGTFN 60 SAEEAARAYD VEARRIRGKK AKLNFPDEPT IPQNHRVLHV IPNKVPKPST TQEHSFIPAL 120 NNLANQNDFV YPSANFTSNQ PLVQLDNMPF VPAMSSVTPV EVPAMNLYHD RRSNTFGCSK 180 LGREYYTKTP DISSIAPIST IAEGEGSTPI KSNTNNSVVP PVMENNGVNL EPWMRYLMDD 240 SVDEMISSLL NFDVPRDVVG NMDFGASMTC PSVINF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-19	29	86	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194339.1	1e-132	ethylene-responsive transcription factor 1-like
Swissprot	Q6K7E6	1e-104	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A446VR22	0.0	A0A446VR22_TRITD; Uncharacterized protein
STRING	Traes_6AL_3C182DED5.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1039	38	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.1	2e-32	ERF family protein

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]