PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_362F82EAD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 346aa    MW: 38457.1 Da    PI: 8.6815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_362F82EAD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-133175147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Traes_6AL_362F82EAD.2 31 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 75
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-162581IPR009057Homeodomain-like
PROSITE profilePS5129415.4082680IPR017930Myb domain
TIGRFAMsTIGR015571.6E-182978IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-62981IPR009057Homeodomain-like
SMARTSM007175.3E-113078IPR001005SANT/Myb domain
PfamPF002492.9E-113175IPR001005SANT/Myb domain
CDDcd001672.26E-83376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
PPPPLSEAAA AASSDDASKK VRKPYTITKS RESWTEQEHD KFLEALQLFD RDWKKIEAFV  60
GSKTVIQIRS HAQKYFLKVQ KNGTSEHVPP PRPKRKAAHP YPQKASKNES GYALKTDPSA  120
MLRNSGMNVA VSPWTHNSIP PVVASSFMKE DLGAGSMGPN IFCSSSSEGP PRAWQSGETN  180
DQINQVPSLR IMPDFAQVYS FLGSVFDPST KGHLQKLKEM NPIDVETALL LMRNLSINLT  240
SPDFEDQAVS FRCLTPYLVS SRSYFFPIKK LQRISTACSC LLELGCLFTH CASSRVCPIA  300
MVSAFLVLSV QLVATVQNDW NIWAAIMCLE SSCFANFQNY QKFGMC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089540.0BT008954.1 Triticum aestivum clone wdk1c.pk011.f12:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182043.10.0protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-97RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A446WHH70.0A0A446WHH7_TRITD; Uncharacterized protein
STRINGTraes_6AL_362F82EAD.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-83MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]