PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_30B272DDD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 414aa MW: 46490.6 Da PI: 7.0773 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1.1e-14 | 94 | 137 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++eE + l++ ++++G ++W t+a+ ++ gR++ qc+ rw+ Traes_6AL_30B272DDD.2 94 RVKWSEEENKVLAQMINKHGLKNWQTVAHAIP-GRSAPQCRQRWR 137 789*****************************.***********8 PP | |||||||
2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 146 | 188 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W+ ++++ gRt +k++w+ Traes_6AL_30B272DDD.2 146 KEAWSEQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGAIKEYWR 188 579*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.653 | 89 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 93 | 142 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.03E-23 | 94 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 94 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 96 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-12 | 96 | 137 | No hit | No description |
PROSITE profile | PS51294 | 18.2 | 141 | 195 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-10 | 145 | 193 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-11 | 146 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.00E-9 | 148 | 188 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-16 | 150 | 196 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
AHIPNWVGTT GAPFLSYCCS VTCIRLSPSV CTYDYHLYCC WFCWVISIEH NWKDCWFILR 60 FSVTEKGFRG QLCKNDGHSF KESCSITNSE VLTRVKWSEE ENKVLAQMIN KHGLKNWQTV 120 AHAIPGRSAP QCRQRWRYKI DSAINKEAWS EQEELRLIRA HQIYGTKWRE MVKHFPGRTN 180 GAIKEYWRGP MKRKLNSYLS SGLLEQFPDI LENLSGTQNK SLDILKGTKV SDILNDTEGS 240 SERNEMSSAV PRISISEVGF TEVGENADVL GGESADFMYA RVASAKAPEN IIARSEQHAK 300 TRRKLDLLSS PVELKSSSYE VNSQRPLQQR EQMSPAVGGV SPSNGCHDVL PKILSECAKP 360 VLSPTGSYQP SDVHSAGTSD PCSLELDISD LMEMSYFDNL LIFPPGSPHD GNSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 92 | 197 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951905 | 0.0 | JF951905.1 Triticum aestivum clone TaMYB22 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172077.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172078.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172079.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172080.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172082.1 | 0.0 | transcriptional activator Myb-like | ||||
TrEMBL | A0A3B6NR20 | 0.0 | A0A3B6NR20_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VED1 | 0.0 | A0A446VED1_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_30B272DDD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 7e-39 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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