PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_1EDDDC063.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 815aa    MW: 84314 Da    PI: 10.7475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_1EDDDC063.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.7e-08109153244
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                            ++WT++Ed  l  +v++ G g+W  I r+ +   +Rt  q+  rw
  Traes_6AL_1EDDDC063.1 109 KAWTKDEDAELRAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 153
                            68*******************************99**99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10102160IPR009057Homeodomain-like
PROSITE profilePS5129415.652103161IPR017930Myb domain
SuperFamilySSF466893.21E-11106159IPR009057Homeodomain-like
SMARTSM007172.2E-7107159IPR001005SANT/Myb domain
PfamPF002499.7E-7109153IPR001005SANT/Myb domain
CDDcd116602.84E-12114158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MSTLYTQNVI LLSLICTMYL ILSYKLQILM YGPSREQGSS HRANSDVPLL NTPNEKIPRV  60
SSDKQLAQSH RLTNGTGPVS NSKQAPHTGL SPDSFDGNGP HNKKTKKTKA WTKDEDAELR  120
AGVHKCGEGN WLDILRKYNF DSTRTYGQLS QRWAVISRRQ ATTKPAKAKP VTGGYDMKAT  180
QKAFFMALDM PMGKPGGLST LRSGASQQST QHPAPVFGAA APELKSATSS SSFSLPVPVP  240
SAAPGPVSAQ VQVQPPRAQQ VPSQAAPSKV SNASIKSRNS SKKQTAQANP TNAPSSIQAA  300
AIAAGGRIAT ASIATNLLKA AQSPQAVHIR SRGKGSSKTS TSSKASTMAG EPGTQTGGAQ  360
HPELPNCSAP TQSPTVLITQ STEQVNVVPE VAGVNPPEQS ASAHLLEPDR TLSTTPVPGP  420
CDNMEIDDDS TFCVVTMEDL FPEDVKQPET VKQPEMVRQP ETVRQVRQPE MVKQPETVRQ  480
PEMVDPKAEE MIDPKDADML EFDRFVAQGC LTTDYSDKSK GVKIAPGAQG ATASQKKKQL  540
PTVGKNIPVF RAPVTMKKTK ALPSHGATLA STVASSGLVG TGNAGVLSKA IYRKPAGPGT  600
TGKQNRCQEI MAQKQHAMNS NSSAMARNAA AGTGTPARNV AAGAGAPARN AAPATGTPAK  660
SAAPATGTPA KNAAPASGTP ARNTAPGTGT PPVRNTAPGT GTPPIRNMAP GTGTPSVRNT  720
APPVRNMAPG PGTPAVRNTA PGTGTAARNS LTGTGTPQAR NLLTGTGTPP ARNAAPVTGA  780
TPARNLLTGT GTPPAIRQHN PAVNGASKGN PPASQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708180.0AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186657.10.0mucin-5AC-like isoform X2
TrEMBLA0A446VRA10.0A0A446VRA1_TRITD; Uncharacterized protein
STRINGTraes_6AL_1EDDDC063.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-11MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]