PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_1A07854E2.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 275aa    MW: 31344.5 Da    PI: 10.6487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_1A07854E2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-0686108123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k F r  nL+ H r H
  Traes_6AL_1A07854E2.2  86 FVCEVCNKGFQREQNLQLHRRGH 108
                            89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-785108No hitNo description
Gene3DG3DSA:3.30.160.603.2E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09486108IPR007087Zinc finger, C2H2
PfamPF121711.5E-586108IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-7158183No hitNo description
SMARTSM00355210163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIREGH QQDQMKPLLA QQQRQHVVAP PSALLTAGPD QAAAAAPPVK  60
KKRTMPDPDA EVIALSPKTL MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKDPN  120
QVQRRRVYLC PEPTCVHHEP GRALGDLTGI KKHFCRKHGE KKWKCDKCAK RYAVQSDWKA  180
HSKICGTREY RCDCGTLFSR YVRTYLLLPP VARSLYLPYV RTAAHMHART VLPRTNLRWS  240
RHCMHARTQA AKMLNTPIFH GLRAVFRSMD DLLCW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-21159200344Zinc finger protein JACKDAW
5b3h_F3e-21159200344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3564730.0AK356473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1035D12.
GenBankAK3591320.0AK359132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179604.11e-147protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC13e-88IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A446VJA90.0A0A446VJA9_TRITD; Uncharacterized protein
STRINGTraes_6AL_1A07854E2.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.16e-89indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]