PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_1688E9E0A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 459aa MW: 50892 Da PI: 5.1963 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 261 | 307 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a+ + E+ RR++iN ++ Lr+llP++ +K++ a+i+ A+eYI++L Traes_6AL_1688E9E0A.2 261 KANFATEKERREQINVKYGALRSLLPSP-----TKNDRASIVGDAIEYINEL 307 68999***********************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.872 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.08E-10 | 259 | 312 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-12 | 261 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 261 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 265 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MIAEGGYFDG SRDAILMAGS LIHDSLDSIC DSTEIAQGNF HGPSFFIEDI CNPTNLTSEP 60 ARTINHIQHR AEFDMDQDLH GHMIQETQVE TSNWVPAMFG TQNHIISQQS IEQQMDDYDA 120 ASYPDGAHTT APDLLNLLQI PRYSMTTAFP STEHIFGDPG QNAGNQLDIN NDVLGRAIHD 180 SGMMLGDLTL PLQYNGNQSH LFKDLYHSLP QSFGLFSSDD ERDRTMGVVG AAGNILQEID 240 GRQFGSPKLG RSKKGGFGKA KANFATEKER REQINVKYGA LRSLLPSPTK NDRASIVGDA 300 IEYINELNRT LKELTSLVEG DTKHRMKMLK LDDAARDNGE SSSLQQVKDD QDSQLNGAIR 360 SSWIQRRSKE CHVDVRIVGN EINIKFTEKK KTNSLLCAAK VTDEFRLELI HVVGGIIGDQ 420 HIFMFNTKIS EGSSVYASAL ASKLLRAMEM EHLAVDIFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357669 | 1e-116 | AK357669.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1058O16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146715.1 | 0.0 | transcription factor EAT1-like | ||||
Swissprot | Q7X8R0 | 1e-167 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | A0A3B6NQY4 | 0.0 | A0A3B6NQY4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AL_1688E9E0A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 7e-50 | bHLH family protein |
Publications ? help Back to Top | |||
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