PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_1144FC823.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11711 Da PI: 10.347 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.7e-10 | 49 | 75 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r +WT+eE++++++a +++G W++I Traes_6AL_1144FC823.2 49 REKWTEEEHKRFLEALQLHGRA-WRRIQ 75 789*****************88.**996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-7 | 38 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-8 | 47 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 49 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-7 | 49 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MACTQENAMA TDESTGDHRG SRPSSHDMDL SGDDHVPKAR KPYTITKQRE KWTEEEHKRF 60 LEALQLHGRA WRRIQGNDRA PVVVQGNRFR TLGSPRSPFL RA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009406 | 1e-116 | BT009406.1 Triticum aestivum clone wlm96.pk054.b21:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193937.1 | 1e-46 | protein REVEILLE 1-like | ||||
Swissprot | F4KGY6 | 8e-20 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A3B6NSE9 | 2e-46 | A0A3B6NSE9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6NTB5 | 3e-46 | A0A3B6NTB5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VJS2 | 2e-46 | A0A446VJS2_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453PAL5 | 1e-49 | A0A453PAL5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6AL_1144FC823.2 | 1e-71 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 3e-22 | MYB_related family protein |
Publications ? help Back to Top | |||
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