PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_1144FC823.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 102aa    MW: 11711 Da    PI: 10.347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_1144FC823.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.7e-104975128
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                           r +WT+eE++++++a +++G   W++I 
  Traes_6AL_1144FC823.2 49 REKWTEEEHKRFLEALQLHGRA-WRRIQ 75
                           789*****************88.**996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-73875IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-84775IPR006447Myb domain, plants
PfamPF002491.6E-74975IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-74977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MACTQENAMA TDESTGDHRG SRPSSHDMDL SGDDHVPKAR KPYTITKQRE KWTEEEHKRF  60
LEALQLHGRA WRRIQGNDRA PVVVQGNRFR TLGSPRSPFL RA
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094061e-116BT009406.1 Triticum aestivum clone wlm96.pk054.b21:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193937.11e-46protein REVEILLE 1-like
SwissprotF4KGY68e-20RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A3B6NSE92e-46A0A3B6NSE9_WHEAT; Uncharacterized protein
TrEMBLA0A3B6NTB53e-46A0A3B6NTB5_WHEAT; Uncharacterized protein
TrEMBLA0A446VJS22e-46A0A446VJS2_TRITD; Uncharacterized protein
TrEMBLA0A453PAL51e-49A0A453PAL5_AEGTS; Uncharacterized protein
STRINGTraes_6AL_1144FC823.21e-71(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-22MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]