PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_E9D675FAC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 540aa MW: 63073 Da PI: 7.3115 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.9 | 3.3e-23 | 11 | 104 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 fYn+Y+ e GFsvr+s+ + n +i+ r+fvCs+eg ree++ k ++++r++r+ t +gCkakl++ +++ + +w v+++ eH Traes_5DS_E9D675FAC.1 11 FYNKYGLEKGFSVRRSYVEWDGSNCHIILRKFVCSREGVREEKHMKrkmEDRKRTPRSITCVGCKAKLVIARQEeTCQWFVKDFIDEH 98 ******************************************99988878889999****************99899*********** PP FAR1 86 nHelap 91 nH+lap Traes_5DS_E9D675FAC.1 99 NHPLAP 104 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-21 | 11 | 104 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-35 | 225 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.716 | 503 | 538 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MFNSEDEGYT FYNKYGLEKG FSVRRSYVEW DGSNCHIILR KFVCSREGVR EEKHMKRKME 60 DRKRTPRSIT CVGCKAKLVI ARQEETCQWF VKDFIDEHNH PLAPRDLSCL LRSHSRISDE 120 QKADIADMEK SGIRKLHIVD IMCMQYGGYD EVGCIMRDIY NFCHANKQET ISSGDAQTVI 180 NHMVARQEQD SDFFFRYLVD EAGYLKGLFW SDSQSRLDYE ASGDVIVFDS TYRTNKYNLP 240 FVPFVGLNHH RSTVIFACGI ISHQTSQAYE WMLQTFSDAM GQKHPISVIT DGDLAMQRAI 300 RVVWPDSNHR LCIWHIQQNI VRHLHDDAVK EEFRSFIYDT SSIEEHERKW LHFLQRNKVT 360 SEDSWLHQMY KMRKLWCAPY LKGRCFLGLN SNQRSESLNS VLNTHLEAKM TLFQMLEHYE 420 HCLASRRLNE ALQDVEALQS VPFTEENSSV LEKHAMKFFT PAVFKLVLWS IDVVKKCEIR 480 EVLDAAEVTT YVVSKKERMD KKIEVRTESK EGLLRSISCS CRKLECAGTP CSHIFYILGI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177846.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453E7V5 | 0.0 | A0A453E7V5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_E9D675FAC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-91 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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