PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_CB04CF707.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 186aa    MW: 19723.2 Da    PI: 7.4098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_CB04CF707.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-1098120426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            + C +++++GtC++G +CkF+H+
  Traes_5DS_CB04CF707.1  98 PDCTYYLKFGTCRFGMKCKFNHP 120
                            89********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.22594122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-597122IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-898120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADANEKAPP KSNLEADLIA SISPSSTSSG ARNAVAIESQ FADLAISDEL PKPSGWGDDA  60
VLGIAGSDEI TGEITGGKVQ PVATADSRPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP  120
ARKKKNRVKA SGSSSSGSND ISNKAFPPDD DQVIWPFKLL LHVCGFLGVF GLHVCGFLGV  180
FGSGTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705170.0AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179364.11e-102zinc finger CCCH domain-containing protein 65-like isoform X1
RefseqXP_020179365.11e-102zinc finger CCCH domain-containing protein 65-like isoform X2
RefseqXP_020179366.11e-102zinc finger CCCH domain-containing protein 65-like isoform X3
RefseqXP_020179367.11e-102zinc finger CCCH domain-containing protein 65-like isoform X4
SwissprotQ2QTY22e-34C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A453K5V01e-105A0A453K5V0_AEGTS; Uncharacterized protein
STRINGTraes_5DS_CB04CF707.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-11zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]