PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_BF6C4095F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 361aa MW: 40723.3 Da PI: 8.638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 33 | 115 | 14 | 98 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ ++p kfa+++ ++++ e+ +l+l+ +sg++W v + +k ++ +l++GW +F+ka++L+e+D ++F+ +g+ +f v +f+ Traes_5DS_BF6C4095F.2 33 AITRIPDKFASSFirQMQTSEGLDLKLKAPSGETWHVGV--SKVANELFLRSGWGGFAKAHELQENDLLLFTCTGNASF--EVLIFD 115 5678******999**8899999*****************..*******************************9888777..888887 PP | |||||||
2 | B3 | 56.6 | 4.8e-18 | 247 | 341 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 l+++ k++ l++p kfa++h ++k ++ ++ l ++ +W v++ y ++ r++ + W +Fv++ngL+egD++vF+l+ g + Traes_5DS_BF6C4095F.2 247 LMTHLQRKNNFLTIPSKFAADHlQSK-PR--EVLLLRlSREDKWHVRC-YYSSRTRCFNCQRWVKFVRDNGLREGDVCVFELIkGArK 330 55666678899***********5444.33..4555553788*******.6666667777889*******************9965567 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++++v+v r+ Traes_5DS_BF6C4095F.2 331 MTTMTVHVARR 341 78888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 5.8E-7 | 27 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-18 | 34 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.8E-15 | 35 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-18 | 35 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-16 | 36 | 115 | No hit | No description |
PROSITE profile | PS50863 | 12.717 | 37 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-22 | 234 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-21 | 235 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.38E-18 | 240 | 340 | No hit | No description |
SMART | SM01019 | 3.3E-13 | 242 | 344 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.085 | 243 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-16 | 247 | 341 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MLDGLDDMDG VEDVRFDELI GMQGVVFHLV GNAITRIPDK FASSFIRQMQ TSEGLDLKLK 60 APSGETWHVG VSKVANELFL RSGWGGFAKA HELQENDLLL FTCTGNASFE VLIFDPSGCE 120 KLSPLFAGRM RKHFDNMVGQ GGVEQYPDSD DTRVPSQFVG SPQKASTSRK CSGKTKSSKE 180 LPESPSSTSC HVKLEATEEQ KSDDDTCTEP GYYSSRTASQ LNEDEKQEIM ERASIRPGNP 240 AFVVVLLMTH LQRKNNFLTI PSKFAADHLQ SKPREVLLLR LSREDKWHVR CYYSSRTRCF 300 NCQRWVKFVR DNGLREGDVC VFELIKGARK MTTMTVHVAR RKKDGRFVAG QWAARGRRLR 360 L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-33 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161789.1 | 0.0 | B3 domain-containing protein LOC_Os12g40090-like | ||||
Refseq | XP_020161790.1 | 0.0 | B3 domain-containing protein LOC_Os12g40090-like | ||||
Swissprot | Q2QMT5 | 1e-102 | Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090 | ||||
TrEMBL | A0A3B6MLG3 | 0.0 | A0A3B6MLG3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453JTD6 | 0.0 | A0A453JTD6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_BF6C4095F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-26 | B3 family protein |
Publications ? help Back to Top | |||
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