PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_A71D29AE1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 892aa MW: 98374.9 Da PI: 6.1076 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Traes_5DS_A71D29AE1.1 131 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIF 217 99******************************9999996.9*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 ++++ +l+++++ Traes_5DS_A71D29AE1.1 218 I--WNDNNQLLLGIRH 231 *..6767777888875 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k Traes_5DS_A71D29AE1.1 257 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 340 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-47 | 118 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-41 | 122 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.97E-22 | 130 | 223 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 131 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 131 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-23 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 257 | 340 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.84E-6 | 756 | 833 | No hit | No description |
PROSITE profile | PS51745 | 24.11 | 757 | 841 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.5E-5 | 803 | 843 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS 60 TNKEVDSQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL 120 GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE 180 WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP 240 SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM 300 RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI 360 EPLTTFPMYP TAFPLRLKRP WASGLPSMHD MFNGVKNDDF SRYSSLMWLG DGDRGAQSLN 420 FQGVGASPWL QPKMDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG 480 GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPSQQGH 540 QVIQQSHQEM QQQLSSGCHR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG 600 FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNMSH 660 FAGTLAPQSA RDSSSVQAYG ANVDNQFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS 720 GEDLPPADTL ATSSCIGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITKFSSY 780 YELRGELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ 840 EVQQMVRGGG EGLLSSAPGA RMAQGNVCDG YSGGHDLQNL TGNMASVPPL DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 24 | 361 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368822 | 0.0 | AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168308.1 | 0.0 | auxin response factor 25-like isoform X2 | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A3B6MJ92 | 0.0 | A0A3B6MJ92_WHEAT; Auxin response factor | ||||
TrEMBL | A0A453JM93 | 0.0 | A0A453JM93_AEGTS; Auxin response factor | ||||
STRING | Traes_5DS_A71D29AE1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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