PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DS_9E038EFF9.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 809aa MW: 93721.6 Da PI: 5.685

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DS_9E038EFF9.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.6e-20	208	290	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +GF+ ++ +++ + +k ++ C+++gk++ + + +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+ Traes_5DS_9E038EFF9.2 208 RFYNTYALLTGFEAKRGTNYMR------KKFHLICNRSGKSRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHP 287 5***************9998......4678******99988.99999**************.9************* PP FAR1 89 lap 91 l+p Traes_5DS_9E038EFF9.2 288 LCP 290 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-17	208	290	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-28	412	503	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.124	694	730	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MPPSPGADTH KFVMGDMVTE LDEAGVRNTE NSTEQREAYN VVDDEGSPVP VLMLPSGKIK 60 YLTQEPVGNQ SMTEGRLQPA GDNYQEPVGK QSMTEGTLQP AGDNDQDPSL DSIEKNTEGL 120 LADGQDQQTN SVYHPLQQAE EENQLHDNVE SNEMLRNYSS SETDSDSSSG SDSDSEVGKY 180 FYPQIEQLEM AKQPEPGMKF ETLEDAHRFY NTYALLTGFE AKRGTNYMRK KFHLICNRSG 240 KSRATPDLQR KRKRKSIEKT NCQAKVIVKL TKGQWEFTTV RNEHNHPLCP SASLTKFYLS 300 HKHISTEERS FLKVLQRTRI PPNKVMKIFR RMRGSFGSTP FKKKDGTNLL CAEQHRKENS 360 DVGRMLMYFK EKELQDPSFQ CMKQTDEDNI VRSVFWTDAR SRMDYKIFGD FLLFDTTYTT 420 DRHNMLFAPI IGINNHGRTL LLGCALLHDE SAETYKWMFE TLLHVMEDKM PVSIITNQDE 480 AMAKAIGEVM PQVRHRLCKW DVLEKAQQNI SAFIAESGNI KADLDSLVDN SLTEKEFEEG 540 WDALIERYGA SENEYLQILW QRRKNWVPVY FREDFYPFVQ SHGCDKGMNL LFNDYVLSID 600 RIEKFIERYE EIHKNITKTD EEDRLQTGTV PSCFSLQPIE KHAADIYTRQ IFLKVQRELL 660 HSTAFNVQEV QRGAVYRLNK VFNYENPEFD RNNFEVQVES GTNAFKCQCA KFTRDGILCC 720 HIFRLFTQFG INQIPEQYIV PRWTEKFREE KEKQYKEKCS EQMDTTMRYT NFMTKMADLG 780 KTICSDGAKY DAFMLEVDKI QENFATAQK

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MPPSPGADTH KFVMGDMVTE LDEAGVRNTE NSTEQREAYN VVDDEGSPVP VLMLPSGKIK  60
YLTQEPVGNQ SMTEGRLQPA GDNYQEPVGK QSMTEGTLQP AGDNDQDPSL DSIEKNTEGL  120
LADGQDQQTN SVYHPLQQAE EENQLHDNVE SNEMLRNYSS SETDSDSSSG SDSDSEVGKY  180
FYPQIEQLEM AKQPEPGMKF ETLEDAHRFY NTYALLTGFE AKRGTNYMRK KFHLICNRSG  240
KSRATPDLQR KRKRKSIEKT NCQAKVIVKL TKGQWEFTTV RNEHNHPLCP SASLTKFYLS  300
HKHISTEERS FLKVLQRTRI PPNKVMKIFR RMRGSFGSTP FKKKDGTNLL CAEQHRKENS  360
DVGRMLMYFK EKELQDPSFQ CMKQTDEDNI VRSVFWTDAR SRMDYKIFGD FLLFDTTYTT  420
DRHNMLFAPI IGINNHGRTL LLGCALLHDE SAETYKWMFE TLLHVMEDKM PVSIITNQDE  480
AMAKAIGEVM PQVRHRLCKW DVLEKAQQNI SAFIAESGNI KADLDSLVDN SLTEKEFEEG  540
WDALIERYGA SENEYLQILW QRRKNWVPVY FREDFYPFVQ SHGCDKGMNL LFNDYVLSID  600
RIEKFIERYE EIHKNITKTD EEDRLQTGTV PSCFSLQPIE KHAADIYTRQ IFLKVQRELL  660
HSTAFNVQEV QRGAVYRLNK VFNYENPEFD RNNFEVQVES GTNAFKCQCA KFTRDGILCC  720
HIFRLFTQFG INQIPEQYIV PRWTEKFREE KEKQYKEKCS EQMDTTMRYT NFMTKMADLG  780
KTICSDGAKY DAFMLEVDKI QENFATAQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	254	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360162	0.0	AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161795.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453JTF7	0.0	A0A453JTF7_AEGTS; Uncharacterized protein
STRING	Traes_5DS_9E038EFF9.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-81	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]