PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_8FE90C496.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 56aa    MW: 6646.87 Da    PI: 11.545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_8FE90C496.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14e-1010476399
                           TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3 63 kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                           + W++Fv++n L+eg +++F+l++  ++++++v+v+rk
  Traes_5DS_8FE90C496.1 10 RRWNKFVRDNMLREGYVCIFELMKGaRKATMTVHVLRK 47
                           67*******************99877*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.25148IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-8746IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-8947IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-81047IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
SRVTRGFNSR RWNKFVRDNM LREGYVCIFE LMKGARKATM TVHVLRKVDD KFVLLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.12e-32B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT22e-24Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A453JTF64e-31A0A453JTF6_AEGTS; Uncharacterized protein
STRINGTraes_5DS_8FE90C496.11e-33(Triticum aestivum)
STRINGTRIUR3_17244-P17e-32(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]