PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_8F3BD4450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 41321.2 Da PI: 9.9696 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 6 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l +v+q+G++ W+++a++m+ + R +k+c +rw +yl Traes_5DS_8F3BD4450.2 6 RQRWRPEEDAILRSYVRQYGPREWNLVAQRMNvpLDRDAKSCLERWKNYL 55 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34 | 7e-11 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Traes_5DS_8F3BD4450.2 61 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.015 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-13 | 5 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-21 | 6 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-8 | 8 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 8 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 9.5E-14 | 9 | 69 | No hit | No description |
SMART | SM00717 | 1.4E-9 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.096 | 60 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 63 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.95E-6 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNVPL DRDAKSCLER WKNYLRPGIK 60 KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REIRDSRRPP 120 PEPSPDERGR YEWLLENFAE KLVKERQQVG VGATPLHHHL MAAPMLPPSM SSTATNGAPV 180 SPAPPSPSVT LSLASAVVPP PTAAPWMQQQ MAEDGAAFGF ARPPPAPGMV ADAPQAALAE 240 LAECCRELDE GHRAWAAHRK EASWRLKRVE LQLESERACR RREAAEEFEA KMRALWEEQA 300 AAVERLEAEY REKVAGLRRD AELKEQKMAE QWAAKHARLT KFLEQVGSSC RRWPPGEMNG 360 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-15 | 9 | 103 | 7 | 98 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-15 | 9 | 103 | 7 | 98 | C-Myb DNA-Binding Domain |
1msf_C | 9e-15 | 9 | 103 | 7 | 98 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB443456 | 0.0 | AB443456.1 Triticum aestivum WRS2 mRNA for Myb transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182147.1 | 0.0 | protein rough sheath 2 | ||||
Swissprot | Q94IB1 | 1e-145 | RS2_ORYSJ; Protein rough sheath 2 homolog | ||||
TrEMBL | A0A453JXB0 | 0.0 | A0A453JXB0_AEGTS; Uncharacterized protein | ||||
TrEMBL | B7XBB5 | 0.0 | B7XBB5_WHEAT; Myb transcription factor | ||||
STRING | Traes_5DS_8F3BD4450.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-99 | MYB family protein |
Publications ? help Back to Top | |||
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