PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_620A46565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 773aa MW: 88994.1 Da PI: 4.9543 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.8 | 1e-24 | 95 | 182 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel Traes_5DS_620A46565.1 95 LYCEYGHRMGFSVRKGKQYYFTGTKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHEL 180 7*****************************************9988..9999************************************ PP FAR1 90 ap 91 +p Traes_5DS_620A46565.1 181 VP 182 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-22 | 95 | 182 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.9E-31 | 293 | 387 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.619 | 574 | 610 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.5E-5 | 576 | 603 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-7 | 585 | 612 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 773 aa Download sequence Send to blast |
MEGTSVPIEI DGDAICLENV GDDEHEAQES GQVQIIYATE NGAQVAFDSQ EQGTEEHSVR 60 SEEDQENNSV IPSREEFTEE LRTKVAYSEE QAYRLYCEYG HRMGFSVRKG KQYYFTGTKV 120 IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDSEGQWRVI QIIPEHNHEL 180 VPPEEIHLLR SVRILSIPKP GTLNAMVNAE IQSMHDSLHV HDDGAECHSQ VSIQSYALLE 240 PEDAEALVGY LKRRTIEQGM FYWDVQVDQE GQMTNFFWRD GRSCVDYDCF GDVVVFDTSY 300 RTNKYNMICA PFVGINHHMQ NVMFGCAFML DESVTSYEWL LKSFLESMGG CPPKTIFTDQ 360 NDTISKAIEV ILPETRHCLC QWHIEKNLQA HLDTPNASGT FHSMFMKCMK DCESEAEFEE 420 TWAMMRQEHN LQDDQWLTDL FEQRHKWCTA LHKVAFDCGI RSLDRNFSSH NVLGSIADES 480 TSPTNFALEF DKLVGSWRTN ESVDDIQCKQ ISPECSVKQN SILQHAAEVY THKVYKSLET 540 EFLDGCTGTS YQEMQCSETL YRFEFIMQSS PKVWIVFLDT STMELSCSCK KFEMMGILCS 600 HALNALGLKN LDKIPESYVL KRWTKYVRKG TYVFPSDQSP EQDCTEAVLA YRNRAMWFVY 660 DLLMKSKGHQ DTRKLILDVL ENGEKSLESV CELKRMHIHP SGKDKDASKA EKRKKKLSKQ 720 DKNSRNVKQV VLPPPAESVF VDQPNQNQYF ATEDIATNSS IGISWYWCFS KSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358485 | 0.0 | AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179689.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453JNF8 | 0.0 | A0A453JNF8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_620A46565.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-82 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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