PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DS_522EE613C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 190aa MW: 19980.3 Da PI: 8.3899

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DS_522EE613C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.4	4.8e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V Traes_5DS_522EE613C.2 7 CHGCRSVLLYPRGAPSVCCAVCHAV 31 ************************9 PP
2	zf-LSD1	42.5	1.1e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV Traes_5DS_522EE613C.2 46 CVGCRTLLMYTRNATTVRCSCCDTV 70 ************************9 PP
3	zf-LSD1	48.8	1.1e-15	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ Traes_5DS_522EE613C.2 87 CGQCQTVLMYPYGASSVKCAICNFI 111 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.2E-12	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-10	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.2E-13	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-10	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-12	84	113	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.7E-14	87	111	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTNAPPPGME MAQLICVGCR TLLMYTRNAT 60 TVRCSCCDTV NLARPAPPVN SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITNIGMNTVR 120 PLPPTMHAPN GISYSVPSTS ASSNFPFPCI GQPSTQSQNV TVVVENPMTV DDKGKLVSNV 180 VVGVTSGGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX135580	0.0	JX135580.1 Triticum aestivum cultivar Suwon11 LOL2 (LOL2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198652.1	1e-123	protein LOL2-like
Swissprot	Q2QMB3	4e-96	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A446SPI6	1e-130	A0A446SPI6_TRITD; Uncharacterized protein
STRING	Traes_5DS_522EE613C.2	1e-135	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	5e-53	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]