PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_51467BEB4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 289aa    MW: 31490 Da    PI: 4.5519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_51467BEB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-112192591055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Traes_5DS_51467BEB4.1 219 RKRRERINERLKTLQTLVPNG-----TKVDMSTMLEEAVQYVKFLQ 259
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.637209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15211275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-13218263No hitNo description
PfamPF000107.3E-9219259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEAGGLISEA GWTMFDFPPQ GEESDIMAQL LGTFPSHGDE AQQDLPWYQA SHPSYYDADL  60
NTSACSDSNA SSFAVPSECM GYYLGDSSEA LGITSLAPQD LNLVQEQGAT EFLNMIPSIS  120
HDLYRNGESS CEGLDSVSAT NKRKHSVEEE IDGQARGRKC ARKAAPKRAK NAKQTEASCC  180
TSDNDSNASQ ESADAGVTPK GKARAGRGAA TDPQSLYARK RRERINERLK TLQTLVPNGT  240
KVDMSTMLEE AVQYVKFLQL QIKVLSSDEM WMYAPIAYNG MNIGLDLNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192439.10.0transcription factor SPATULA-like
TrEMBLA0A3B6MLM80.0A0A3B6MLM8_WHEAT; Uncharacterized protein
TrEMBLA0A453JU170.0A0A453JU17_AEGTS; Uncharacterized protein
TrEMBLM8CMC20.0M8CMC2_AEGTA; Transcription factor bHLH84
STRINGEMT246410.0(Aegilops tauschii)
STRINGTraes_5DS_51467BEB4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-45bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]