PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_50846FD0C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 883aa    MW: 95733.5 Da    PI: 7.1445
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_50846FD0C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-1855112457
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  Traes_5DS_50846FD0C.1  55 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 112
                            6789****************************************************97 PP
2START160.99.5e-512054104204
                            HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                  START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                            ee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g
  Traes_5DS_50846FD0C.1 205 EETLTAFLSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngG 291
                            68899***************************************************.8888888888********************* PP

                            EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                  START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                            +++l++++++a+++l++ Rdf+++Ry+  l +g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl+
  Traes_5DS_50846FD0C.1 292 TIELIYMQTYAPTTLAApRDFWTLRYTCGLDDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLD 379
                            ***************999****************************9999999*********************************** PP

                            SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                            +++++++lr+l++s  + ++k++ a+l++ +
  Traes_5DS_50846FD0C.1 380 AWSVPEVLRPLYESPKIVAQKMTIAALRHIR 410
                            **************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.12749113IPR001356Homeobox domain
SMARTSM003895.9E-1551117IPR001356Homeobox domain
SuperFamilySSF466896.84E-1654115IPR009057Homeodomain-like
CDDcd000865.69E-1654114No hitNo description
PfamPF000465.8E-1655112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-1856112IPR009057Homeodomain-like
CDDcd146867.32E-6106145No hitNo description
PROSITE profilePS5084823.819193412IPR002913START domain
CDDcd088754.63E-67197413No hitNo description
SMARTSM002341.3E-42202412IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-23202385IPR023393START-like domain
SuperFamilySSF559618.1E-38203413No hitNo description
PfamPF018521.6E-48205410IPR002913START domain
PfamPF086702.3E-47738882IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MTRHRPWPPS HPPPPHPLPL RVVAAAPQAT GSGAGKKMAR LSPGAAAPQV DTGKYVRYTP  60
EQVEALERVY NECPKPSSLR RQQIIRDCPI LCNIEPKQIK VWFQNRRCRE KQRKESSRMQ  120
TVNRKLTAMN KLLMEENDRL QKQVSRLVYE NASVKSLKTK IHKASAATTD TSCESVVTSG  180
QQQALAAPRP QRDANNPAGL LAIGEETLTA FLSKATGTAV EWVQMMGMKP GPDSIGIIAV  240
SHNCIGVAAR ACGLVSLEPT KVAEILKDRP SWYRDCRCVD ILHVFPTGNG GTIELIYMQT  300
YAPTTLAAPR DFWTLRYTCG LDDGSLVICE RSLTQSTGGP SGPNTPGFIR AEVLPSGYLI  360
RPCEGGGSMI HIVDHVDLDA WSVPEVLRPL YESPKIVAQK MTIAALRHIR QIAHESSGEI  420
PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP DDGWSLLTSD GAEDITITVN SSPNKLVGSH  480
ISPSPLFSAI GGGILCAKAS MLVQDVPPAL LVRFLREHRS EWADPGVDAY SAASLRASPY  540
AVPGLRAGGF MGNQVILPLA HTLEHEEFLE VLRLEGHGFS HEEVLLARDM YLLQLCSGVD  600
ENASGACAQL VFAPIDESFA DDAPLLPSGF RVIPLDTKTD VPSATRTLDL ASALEVGSGG  660
ALRGSGDSPG GCSTRSVLTI AFQFSFENHL RESVAAMARQ YVRAVMASVQ RVAMAIAPSR  720
LGSQIQLKHP PGSPEALTLA SWIGRSYRAH TGEEIRWSDT EEADSPLKLL WNHSDAILCC  780
SLKPAPMFTF GNNAALDMLE TTLVNLQDIS LEAILDDEGR KALCAEFSKV MQQGFAYLPG  840
GVCKSSMGRQ ASYEQAVAWK VVGDDVAGAP HCLAFMFVNW TFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A3B6MKM20.0A0A3B6MKM2_WHEAT; Uncharacterized protein
STRINGTraes_5DS_50846FD0C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]