PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_4C8D413E1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 887aa    MW: 101351 Da    PI: 8.7348
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_4C8D413E1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-19252333291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            fY++YA  +GF  ++++++++       k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l
  Traes_5DS_4C8D413E1.2 252 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPARNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPL 331
                            9****************9998......5789***********9998.9**********************.9***************9 PP

                   FAR1  90 ap 91 
                            +p
  Traes_5DS_4C8D413E1.2 332 SP 333
                            86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-17252333IPR004330FAR1 DNA binding domain
PfamPF105515.7E-21473557IPR018289MULE transposase domain
PROSITE profilePS509668.493756792IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
VASTRHCAKN TPCRLPSAST PPAPARRYPS PLLPRRPPPS ASGGCSLGPL SPASARPRCP  60
LRPLRRGGAG RARLTELDKP GAEIADNSTK KRRTCRVADD EGSPVPELHR KKASKNAVET  120
MSSASELSKE PVGKQSMTEE RPQPTGDSYE ELSSDSIEKN TDGILADEAD KETNSVDHSL  180
QQAEEQNQLH DNVENNEMVN RNPSESDSDS SSGSDSDSEL GKYFYPKFEE LEAARKPEPG  240
MKFQTLEDAN GFYSTYALLT GFVAKRNSNY RRQKYHIECN RSGKPTPARN PNRKRKINSF  300
ERTNCQAKVI VKLTKGQWEF ATVRNEHNHP LSPNPSLARF FLSQKHMSSE EKSFLKVLQQ  360
SKIPPNKILR IFRRMRSSFG NISFKKQDPV SSVRSSSENI PSKKKDPISL QCTEQRKTEN  420
SDVESALKHL KELELRNPSF FYIKQIDEDN IVRSIFWTDA RSRMDYNIFG DFISVDTTYT  480
TNRHNLPVAT ITGINNHGRT LLLGCALLRD GRAETFKWMF QTLLQVLGGK IPGSIITNQD  540
EPLGRAIAEV LPQVRLRFWK CDVMGKAHER IAAFMAARGN IKLELDSLVD NSLTEMEFEE  600
GWSSLIERYD ASKNEYLQFM WRIRKIWAPV YFRQDFYPFA ESLGRGEGMN IVLFRNYVLP  660
KDRIEKFIER YEEIQKTTLK TDDEDRRQAG TVPSCFSLQP IEKHSSTIYT RQIFLKVQRE  720
LLHSTAFDVH VVKKGSVYRL ERVFNYENPE FDRNAFEVFV DPVSNTFICQ CAKFARDRLL  780
CCHIFRLFTQ LGINEIPAQY IVPRWTDKFK EEKAKQYTEK CLEKADSTAR YEMLMSKMAD  840
LSKKICSDGT KCNAFMLEFD SIQEKLLATD GENPRDNDNC MEIITTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188688.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A453JKB80.0A0A453JKB8_AEGTS; Uncharacterized protein
STRINGTraes_5DS_4C8D413E1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-72FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]