PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_485F1D5FD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 754aa    MW: 86763.3 Da    PI: 8.524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_485F1D5FD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-141272081098
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            ++++  + +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  +Lk+g f+vF+++g+s f  +v +f
  Traes_5DS_485F1D5FD.1 127 NFQE-KMAIPQKFVQNFKGQ--ISEVIKLEAPDGNIYNVQA--IKDLNKIVLGSGWGVFVRFYELKAGYFLVFRYIGDSHF--KVLIF 207
                            4444.499******888888..7779***************..999999****************************9999..88777 PP

                            - CS
                     B3  98 r 98 
                            +
  Traes_5DS_485F1D5FD.1 208 D 208
                            5 PP
2B347.72.7e-152883671499
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + + +p kf++++ g    sk ++le ++g+++++++  ++  ++++l++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  Traes_5DS_485F1D5FD.1 288 HEMNIPEKFVNNFRGR--ISKVMKLEAPDGNVYNIQV--TNDLNKITLRSGWAAFASAYELKEHDLLVFSYTGNSHF--RVLIFDP 367
                            6799******888766..7899***************..**********************************9999..9999885 PP
3B336.67.9e-12489572994
                            HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                             +l sg lv+ k++a+++     e++ +tl + ++++ W  +l+++  + + +l++GW+ Fv  n+L+e D++vF+++++  e ++vv
  Traes_5DS_485F1D5FD.1 489 TSL-SGSLVICKDYAAKYLPH--EDQFITLCHpRKSNIWLDNLKVTTDG-SGMLSAGWSCFVLHNELRESDVCVFEVSKSaGEMTMVV 572
                            333.466***********423..344677777477799*9999654444.458***********************887544444444 PP
4B350.34.3e-166587451199
                            HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                     B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                             k+++l++p kfa++h ++++++  l l+  ++++W  ++ y   ++++   + W +Fv++n+L+eg ++vF+l++  s++ + v+vf
  Traes_5DS_485F1D5FD.1 658 IKNNLLTFPEKFAAKH-LVERSHDILLLRPNRSETWCARYYYHPEKQGFS-YSSWTKFVRDNKLREGHVCVFELIKGvSKAMMIVHVF 743
                            6899***********9.4555555566666889*******9999998875.569*********************888***9999999 PP

                            -S CS
                     B3  98 rk 99 
                             k
  Traes_5DS_485F1D5FD.1 744 TK 745
                            65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-21113212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19114208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.757117210IPR003340B3 DNA binding domain
CDDcd100171.16E-18118208No hitNo description
SMARTSM010199.4E-9120210IPR003340B3 DNA binding domain
PfamPF023627.1E-13121207IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-21271370IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-19272370IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561275368IPR003340B3 DNA binding domain
CDDcd100177.52E-16276366No hitNo description
SMARTSM010192.4E-7278368IPR003340B3 DNA binding domain
PfamPF023628.9E-13288366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16476573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-17479575IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-9480574No hitNo description
PROSITE profilePS5086310.701480576IPR003340B3 DNA binding domain
SMARTSM010190.0016483576IPR003340B3 DNA binding domain
PfamPF023625.7E-9488573IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-16640743IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-16641743IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-7647745IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674648746IPR003340B3 DNA binding domain
PfamPF023621.6E-14657745IPR003340B3 DNA binding domain
CDDcd100173.82E-13663743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MSCFHLHLLN KLFKWDSFFN RRYDGTARTR PTISAGMVCI CIYMYALFLW AWASLAFWLL  60
LCRSIGSWQR ILITFVMAPD QDHEQDNRSG HSISSKSFQR CEGCDAHYYW CHMDDTQKYF  120
FKCMVGNFQE KMAIPQKFVQ NFKGQISEVI KLEAPDGNIY NVQAIKDLNK IVLGSGWGVF  180
VRFYELKAGY FLVFRYIGDS HFKVLIFDFA SCCEKEVFHV LMNCGPNAQE KDTRLDRSLL  240
GEKRCQNGGS SNSESHRRCE HCDVHFYWHH MDDRQKHFLR FMVGDFLHEM NIPEKFVNNF  300
RGRISKVMKL EAPDGNVYNI QVTNDLNKIT LRSGWAAFAS AYELKEHDLL VFSYTGNSHF  360
RVLIFDPSGC EKELFRIVMN HTPNVQKGGI SHDQLFLKET RRRDGGSRDN NPRKTKKMTL  420
LDSPSPKSAE GVTSPEDTMN SSGPPETTEP RYVLATGCNL TTAQKAQIDT LVKKIRPVIP  480
FYITAMNKTS LSGSLVICKD YAAKYLPHED QFITLCHPRK SNIWLDNLKV TTDGSGMLSA  540
GWSCFVLHNE LRESDVCVFE VSKSAGEMTM VVHSLEGGHH LQGKEPESQN KCDYPVKGKA  600
IKEAESDHKH AESKSNYYYS KYAKGLNGEE LEEIFRSALI QQGNVVYVTI LGKNQVRIKN  660
NLLTFPEKFA AKHLVERSHD ILLLRPNRSE TWCARYYYHP EKQGFSYSSW TKFVRDNKLR  720
EGHVCVFELI KGVSKAMMIV HVFTKVDGRF VLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A3B6MKA00.0A0A3B6MKA0_WHEAT; Uncharacterized protein
STRINGTraes_5DS_485F1D5FD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-18B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]