PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_476AB27D8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 1169aa    MW: 129539 Da    PI: 9.3925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_476AB27D8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-074580340
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                            W+++E e+++ a +++G++ W+++a  +   Rt  ++
  Traes_5DS_476AB27D8.2 45 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 80
                           6*****************99.******999.9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-93889IPR009057Homeodomain-like
PfamPF002495.2E-64584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-54584IPR009057Homeodomain-like
CDDcd001673.92E-44680No hitNo description
PfamPF065841.3E-33652752IPR033471DIRP domain
SMARTSM011356.4E-58652753IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WPEKDATVVH KNKVRKKKLS DLGSQWSKDE LERFYAAYRK  60
YGKDWRKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNGSPKTS RKPQKRGRAK LQSVSKASDT RYPDLLQSQP ASSSYGCLSL LKKKRSGDLF  180
VGNKPRAVGK RTPRVPVASM YQRDDKIGAS NRQAKPDANN GDDEGALAAL ALAEVCQRGS  240
PQVSQTSGRS SGQMFLSPGK SIDRKNADSE MGSSKMHGFQ VEADYPEGSL GSREAETGDY  300
PKDASYFLNN EGSVSGKSKP KVKRSQKRRK KAAHKPENQF EDDREACSGT EEGCSSRKAK  360
DISDLDVFGS KGSWPSNKSN KRSRQLFFGD ELSALDALHT LADISVNILQ PSSIAESESS  420
AQFKDGSKDN ESDDKPSVPA AVSLFDKKDK PRKTKKIKRQ SEIAGNEVVT RKKARLSKDH  480
HHDGSTSEVK QDDCKCGVKM EKKKRKSSIL KISKDEKNTL KDSEKTEASA EEGKVSSNKG  540
RHTHVSPVSK QNKSKAQESS PAHADFGKEA MDTVDTTENA ITQQSDSASK SKSRRKLGIL  600
KALAPESKPA EGADDSCDNV SYPVNNVTEL KDKLSHCLSS RFLRRWCMSE WFYSAIDYPW  660
FAKSEFVEYL NHVKLGHVPR LTRVEWGVIR SSLGKPRRLS KQFLQEEREK LSQYRESVRQ  720
HYAELQSGVR EGLPTDLARP LAVGQRVIAC HPKTRELHDG SVLTVDRNRC RVQFDRPELG  780
VEFVMDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF EDRSKEYGGG GAPRFIPNGD  840
AFDSMAQAKT TANEATVAAQ QAMYGQPCTL SQIQEREADI RALAELSRAL DKKEALLVEL  900
RHMNEEVSGK QKDGEIIRDL EHFRKQYAMV LVQLRDSNDH VASALLCLRQ RNTFHGQPTQ  960
SYPNKSTENG GAFNRTPDPS SNLFGYINQE SGSQVMEIIE TSRSKAKTMV DVAVQAMCKV  1020
SEGENAFAKI GEALDNLNLR GTGSGSSILG IRRIPPDSGQ ANSDNSASGR FDPAAATNNI  1080
SSPRVLPNGS DSEAQFPSEL ISSCVATILM IQNCTEKQYH PAEVAHILDS ALSRLQPCSS  1140
QNVPIFREIE MCMGIIKNQM LALIPTPSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318330KPKVKRSQKRRKK
2321327VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658640.0AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183561.10.0protein ALWAYS EARLY 2-like isoform X1
TrEMBLA0A3B6MJ950.0A0A3B6MJ95_WHEAT; Uncharacterized protein
STRINGTraes_5DS_476AB27D8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-167DNA binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]