PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_3EE830A43.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 309aa    MW: 33574.1 Da    PI: 9.6751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_3EE830A43.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT+eE+  l+ ++ ++G g W+tI +          R+  ++k++w++
  Traes_5DS_3EE830A43.1  5 KQKWTAEEEAALKAGIGKHGAGKWRTILKDPEfsnilRCRSNVDLKDKWRN 55
                           79**********************************999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.718161IPR017930Myb domain
SuperFamilySSF466898.58E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-13456IPR009057Homeodomain-like
SMARTSM007171.6E-5459IPR001005SANT/Myb domain
PfamPF002491.8E-6556IPR001005SANT/Myb domain
CDDcd116602.36E-18657No hitNo description
PROSITE profilePS5150421.532124195IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-13125199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-6125190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-13129197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.2E-8132188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRCRSNVDLK DKWRNMNVTV  60
NASGTRDKVR TTTTTTPTAK KPRSAPKQES HSTAITTITS DGDDDVIDVK PIIKPIVTFT  120
TGSGNKSLSR LENIILEAVK TLNEPTGSYK TAVANYIEEQ YWPPADFDHV LSAKLNELTS  180
SGKLMKVNRK YRIAPSSSFL EGRSSKMLLL DDIKKEPTKV EKVERDGFTA HTKSQVDAEL  240
ARMRNMSAEE AAAAAARAVA EADAIMAEAE AAVREAEAAE ADAVAAQAFA EAAMLTLKNR  300
SSAKLIIRG
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2495640.0AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159514.10.0single myb histone 5-like
SwissprotC0HIA31e-104SMH6_MAIZE; Single myb histone 6
TrEMBLA0A3B6MLW20.0A0A3B6MLW2_WHEAT; Uncharacterized protein
TrEMBLA0A453JMQ70.0A0A453JMQ7_AEGTS; Uncharacterized protein
STRINGTraes_5DS_3EE830A43.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-61telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]