PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_1BDB9837E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 416aa MW: 44901.6 Da PI: 4.1666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Traes_5DS_1BDB9837E.1 54 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 103 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.24E-30 | 53 | 110 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 54 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-27 | 54 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-35 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-19 | 54 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.559 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MVPSMARKRK ASDDVSDADI DVGIPLSLAS TDAWTTSTVA AATAARQQQR GRKRFVGVRQ 60 RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGANTRTNF WPRPSPPAAL 120 QPPPPPAMLS MQAPALPSKV SNLLLLRLKA RNQQLLLNDA TAPQEAALLQ QQMQKQMSSS 180 TSSCQESYIH GRDDEYCFQV DDFLSEECNN SPEMEEEEEE EVEEEEEVEE EEELDFQFMD 240 KPAAAGDEDA GLCSPFEMVA AELGGSAPVE ANDVDGEPAT AVQEAMRRMD YERKVSASLY 300 ALSGVSECLR MRLGGGASAA RDQLSGLREA CRKKQRLAVQ QPASEQSSEP AAAAADHGTE 360 EDGKAYVQEE CSGSSSGSSS LTEAGSSSSP EAANGSSDGD VLLWSSLDLA PICYMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171738.1 | 0.0 | uncharacterized protein LOC109757323 | ||||
TrEMBL | A0A3B6MLP4 | 0.0 | A0A3B6MLP4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DS_1BDB9837E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-22 | related to AP2 11 |
Publications ? help Back to Top | |||
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