PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_19B90732F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 174aa MW: 18546.7 Da PI: 10.2502 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.6 | 6.8e-29 | 104 | 154 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Traes_5DS_19B90732F.1 104 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQH 154 9*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 100 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-14 | 101 | 154 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-22 | 104 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 105 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MATAADAPDL SLHISPPSPT GKAGSGRGHE MAISAESTEL CLGFDMATAR QPGEVRNGHS 60 DLEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGNGGKKS SRAPRMRWTT ALHAHFVQAV 120 QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQHSKTEQE DSLSFSPAAN HFRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 105 | 157 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 105 | 157 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 105 | 157 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 105 | 157 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 105 | 157 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189915.1 | 1e-107 | probable transcription factor RL9 | ||||
Swissprot | Q9FJV5 | 6e-30 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | A0A3B6JEG7 | 1e-108 | A0A3B6JEG7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DS_19B90732F.1 | 1e-124 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 2e-30 | G2-like family protein |
Publications ? help Back to Top | |||
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