PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DS_19425E3EE.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 758aa MW: 87132.1 Da PI: 9.8416

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DS_19425E3EE.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.8e-08	736	757	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+++++ C+y + CkF+Hg Traes_5DS_19425E3EE.2 736 ICRYYQQGLRCPYEGDCKFSHG 757 8****88**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.9E-9	110	153	IPR003034	SAP domain
SuperFamily	SSF68906	2.93E-7	111	153	No hit	No description
PROSITE profile	PS50800	8.548	118	152	IPR003034	SAP domain
PROSITE profile	PS50103	13.112	731	758	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.8E-4	733	758	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-5	735	757	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-5	736	757	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGDDGS EAETLADLYG PDAGSDKDPS 60 FDPAADKRAV GEAALWSRMA RLSISARKGR KAPVALEMGN EDIDLLAMVD KLMHDGQLEK 120 LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV 180 VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTVEI FWSKGYKPWP 240 PLHPLLIKGR NLYKDKTMRQ PWPDEKERSR VLEEKHARGF QARKSREVRI HEKEIDKMRR 300 FNRLKDNKSK GKENMNEISS QTVVPQQKVV STNPVDQRFN EGRSDSLQQG EPWNARQQQI 360 SSKQNPAVHL FHQQFLYQGP SVQHGKPEKT RQQQILSRPT TSEQIFKHPT QHDNHRPTPA 420 QQMFKNPQEH NNHHQQQNKV LPQEGTTKTV SILGRAPCLH YGGPGNAVQQ QKLSKPTPME 480 QIRNQSQPLK HEHRNLVLPQ EDAKKGTNRV HSIDHGKAPC LQYAGPGNAM QQQSARPALP 540 QQIKNPPQYA GPGNAMQQQS SRPALPQQIK NPPQPPKHQH TEVLRQEDGN RTYRVEPVDR 600 RNNNYHNTTY DESAFQGRGT QHAKTHQHGS NGHPHAHGDS QWHQPLRPRI QDFSSRNQEG 660 DYRDHRQTTQ EQYNPEERYH HNQYGRGQMI QDQYQPQKIH HQNGHDSWRM NHNQYHPQEN 720 HHQNYRHAQQ FPALKICRYY QQGLRCPYEG DCKFSHGS

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGDDGS EAETLADLYG PDAGSDKDPS  60
FDPAADKRAV GEAALWSRMA RLSISARKGR KAPVALEMGN EDIDLLAMVD KLMHDGQLEK  120
LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV  180
VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTVEI FWSKGYKPWP  240
PLHPLLIKGR NLYKDKTMRQ PWPDEKERSR VLEEKHARGF QARKSREVRI HEKEIDKMRR  300
FNRLKDNKSK GKENMNEISS QTVVPQQKVV STNPVDQRFN EGRSDSLQQG EPWNARQQQI  360
SSKQNPAVHL FHQQFLYQGP SVQHGKPEKT RQQQILSRPT TSEQIFKHPT QHDNHRPTPA  420
QQMFKNPQEH NNHHQQQNKV LPQEGTTKTV SILGRAPCLH YGGPGNAVQQ QKLSKPTPME  480
QIRNQSQPLK HEHRNLVLPQ EDAKKGTNRV HSIDHGKAPC LQYAGPGNAM QQQSARPALP  540
QQIKNPPQYA GPGNAMQQQS SRPALPQQIK NPPQPPKHQH TEVLRQEDGN RTYRVEPVDR  600
RNNNYHNTTY DESAFQGRGT QHAKTHQHGS NGHPHAHGDS QWHQPLRPRI QDFSSRNQEG  660
DYRDHRQTTQ EQYNPEERYH HNQYGRGQMI QDQYQPQKIH HQNGHDSWRM NHNQYHPQEN  720
HHQNYRHAQQ FPALKICRYY QQGLRCPYEG DCKFSHGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374966	0.0	AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151517.1	0.0	zinc finger CCCH domain-containing protein 62-like isoform X1
Swissprot	Q338N2	0.0	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A3B6MK93	0.0	A0A3B6MK93_WHEAT; Uncharacterized protein
TrEMBL	A0A453JTL7	0.0	A0A453JTL7_AEGTS; Uncharacterized protein
STRING	Traes_5DS_19425E3EE.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13107	20	22

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]