PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_13C2391DC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 387aa    MW: 41145.8 Da    PI: 8.7353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_13C2391DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32243298156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH+rFv a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Traes_5DS_13C2391DC.1 243 KARRCWSPELHRRFVAALQRLGGPQVATPKQIREMMKVDGLTNDEVKSHLQKYRLH 298
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-29240301IPR009057Homeodomain-like
PROSITE profilePS5129414.196240300IPR017930Myb domain
SuperFamilySSF466895.29E-17241301IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26243298IPR006447Myb domain, plants
PfamPF002491.3E-7245296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSSAVQKEA VVLNGGGGGA GEDHRLRALA ARTVTDSLRA AVARSSSAEK AARLEECARS  60
LEAEKAKMEV FRRELPISVH LIADGASSAR PALAMIEWLK DEVAQHRRPA PDQLLAPAPA  120
PAPPAKRKAE GVKTEADASD KRSWMSSAQL WTCGSHSSTS NSNGDSIKKQ AQKVEVSNAF  180
MPLNGLPTLA KSSERPEAAA MAVPELSLSS PAIDAPCPTA PSADSSAVTD AGAQREQQSA  240
QRKARRCWSP ELHRRFVAAL QRLGGPQVAT PKQIREMMKV DGLTNDEVKS HLQKYRLHTR  300
RASDGDQQQS ASAGQWPRPE QYTTSQHSSS QSGSPQGPLQ LTVSSRGMSV TVGDSCDGGE  360
ENEEEDGKSA SYSWGMQQKG TKASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13243296154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519510.0JF951951.1 Triticum aestivum clone TaMYB68 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.10.0myb family transcription factor EFM-like
TrEMBLA0A3B6MLQ60.0A0A3B6MLQ6_WHEAT; Uncharacterized protein
STRINGTraes_5DS_13C2391DC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-37G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]