PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_107805DE3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 288aa    MW: 32218.7 Da    PI: 7.5112
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_107805DE3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-094668426
                           ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                           ++C++++r G Ck+  +C+F+H+
  Traes_5DS_107805DE3.1 46 KECPYYMRIGSCKFATNCRFHHP 68
                           68********************9 PP

2zf-CCCH21.83.2e-07191217127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C++f ++G+Ck+ ++Ck++H++
  Traes_5DS_107805DE3.1 191 PGQPECQHFVKSGFCKFKAKCKYHHPR 217
                            5789*********************96 PP

3zf-CCCH278e-09239263327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C ++ r+G Ck+G+ C ++H++
  Traes_5DS_107805DE3.1 239 QPVCTYYERYGVCKFGPACMYNHPF 263
                            789********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00174269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8174270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54369IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-64668IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-44867IPR000571Zinc finger, CCCH-type
SMARTSM003560.001190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502190218IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4192217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5194218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4196217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173236264IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5237263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5238264IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6239263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLIWCQNQNA CMVEPTVDTL KLYQHCCFLN WIFHANVVFM ILQGGKECPY YMRIGSCKFA  60
TNCRFHHPDP TNVVSRDPVL EHENGDIPQQ NVQASSQLNV PVWSADQRAL NEHCAPFLAP  120
ASSYSAGMIP PRGMYPSPEW SGYHQVPLGP YYPPGISFHH FPAPPVNHPM YRGADVPGHQ  180
ELPSDEYPER PGQPECQHFV KSGFCKFKAK CKYHHPRSLV PPPTAGALSP LGLPLRSDQP  240
VCTYYERYGV CKFGPACMYN HPFNFGHPVS AAGPPLSAQY LTSGNYTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705170.0AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179364.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY21e-130C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A453K5V90.0A0A453K5V9_AEGTS; Uncharacterized protein
STRINGTraes_5DS_107805DE3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]