PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_F32936F9C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 71aa MW: 8083.21 Da PI: 11.2851 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7.1e-14 | 14 | 60 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRd++N +f Lr +P+ +++Ka+ L A YI +L Traes_5DL_F32936F9C.1 14 VSHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 60 589************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-16 | 9 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.989 | 11 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-11 | 14 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.18E-9 | 14 | 65 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 15 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-10 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
RGRKPRPRPE GPTVSHVEAE RQRRDKLNRR FCDLRAAVPT VSRMDKASLL ADAAAYIAEL 60 RARVARLEDE S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-21 | 14 | 70 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 7e-56 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 7e-56 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 7e-56 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 7e-56 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194708.1 | 1e-41 | transcription factor MYC2-like | ||||
Swissprot | O49687 | 3e-20 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | A0A3B6MVB8 | 3e-40 | A0A3B6MVB8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_E86F89671.1 | 4e-40 | (Triticum aestivum) | ||||
STRING | Traes_5DL_F32936F9C.1 | 1e-42 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-11 | bHLH family protein |