PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_EB47672ED.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 286aa    MW: 31024.2 Da    PI: 6.05
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_EB47672ED.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-322377155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  Traes_5DL_EB47672ED.4 23 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 77
                           58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8142080IPR017930Myb domain
SuperFamilySSF466891.97E-172277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-312278IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-252478IPR006447Myb domain, plants
PfamPF002494.0E-92576IPR001005SANT/Myb domain
PfamPF143799.0E-24109155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESGENNMGS NDGPNSKANL AARQRLRWTD ELHEQFVEAV TQLGGPDRAT PKGVLRIMGT  60
PGLTIYHVKS HLQKYRLAKY IPDSSADGNK ADNKDPGDSL AGLDGSSGMQ ISEALKLQME  120
VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRFGGGG IKSETPGAGA TVTVSSDQFP  180
DSERTDPSTP APTSESASQG GAFKRDSGSQ TEAIKSPCHD EPLLTADSNC HPGSPTLSPK  240
HERAAKRQRG SDAEFPEAEL SLPQHIFESS SGPEFQQCSV PYYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657330.0AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBankAK3738550.0AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180683.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180688.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180697.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180704.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180710.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW07e-91PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3B6MQG40.0A0A3B6MQG4_WHEAT; Uncharacterized protein
TrEMBLA0A453KKJ10.0A0A453KKJ1_AEGTS; Uncharacterized protein
STRINGTraes_5DL_EB47672ED.40.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-60G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]