PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_E96693018.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 403aa MW: 44714.2 Da PI: 7.813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_E96693018.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.5	2e-17	122	171	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h++ E+rRR++iN++f+ Lr+llP+ ++K +Ka+ L +++eYI+ Lq Traes_5DL_E96693018.1 122 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 171 578***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.5E-24	119	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.482	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-18	120	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.00E-16	122	175	No hit	No description
Pfam	PF00010	1.0E-14	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-13	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MERCTTSMPG ITRIQGPPRF SPYSAFFLKV QLAMKWGMPA VEFLFVVRKN SSYPVILSHS 60 ILAASINCVM HIVSLQCNCD TIRREHCDHQ NKQNIPELAV RVDAKGGSCS GSGTDQLPNT 120 PKSKHSATEQ RRRSKINDRF QILRDLLPHT DQKRDKATFL LEVIEYIRFL QEKAQKYEAS 180 FPEWNQENAK LLPWSNMYFR SSWKNAQSKG QIAEDASPDP SQFIRNGASP GFNITGKLDD 240 NHTAAISGAP DQAETDHMAS VSCRSADTPT NIMNNVSPQS QPQWADPSGV DDCAVNSDVL 300 NNQQLMIDEG TISVSSQYSQ ELLNTLTHAL QSSGIDLSQA NISVQINLGK RAVKRPIAGQ 360 SSNFKEHTDL GPTNNMMGHQ QTMLGNAAEE LPHATKRYKP GNT

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MERCTTSMPG ITRIQGPPRF SPYSAFFLKV QLAMKWGMPA VEFLFVVRKN SSYPVILSHS  60
ILAASINCVM HIVSLQCNCD TIRREHCDHQ NKQNIPELAV RVDAKGGSCS GSGTDQLPNT  120
PKSKHSATEQ RRRSKINDRF QILRDLLPHT DQKRDKATFL LEVIEYIRFL QEKAQKYEAS  180
FPEWNQENAK LLPWSNMYFR SSWKNAQSKG QIAEDASPDP SQFIRNGASP GFNITGKLDD  240
NHTAAISGAP DQAETDHMAS VSCRSADTPT NIMNNVSPQS QPQWADPSGV DDCAVNSDVL  300
NNQQLMIDEG TISVSSQYSQ ELLNTLTHAL QSSGIDLSQA NISVQINLGK RAVKRPIAGQ  360
SSNFKEHTDL GPTNNMMGHQ QTMLGNAAEE LPHATKRYKP GNT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353724	0.0	AK353724.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002F06.
GenBank	AK375950	0.0	AK375950.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3110M08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150023.1	0.0	transcription factor BIM1-like isoform X2
Swissprot	Q9CAA4	1e-58	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A446UCQ2	0.0	A0A446UCQ2_TRITD; Uncharacterized protein
STRING	Traes_5DL_E96693018.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	6e-61	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]