PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_DC941F119.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 285aa    MW: 32054.6 Da    PI: 6.5109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_DC941F119.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-10471053698
                            EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            l+l     ++W vk+  ++  ++ +l++GW +Fv a+g+ +g  +v++++   ++ l++k+f+
  Traes_5DL_DC941F119.2  47 LVLSPFGKNVWPVKV--DRDAKGAFLGDGWPQFVAAHGIGVGWYLVIRHE--GCGVLTLKAFN 105
                            4444445599*****..*******************************65..57778888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.6E-413107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-1023107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-945106IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-848106IPR003340B3 DNA binding domain
CDDcd100172.34E-655105No hitNo description
PROSITE profilePS508638.6757107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-5131226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-6132225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.034176228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLSSNCAKT IKIQQCVKLP DSKYLHINDE LAGCFGTEDH GDGRAALVLS PFGKNVWPVK  60
VDRDAKGAFL GDGWPQFVAA HGIGVGWYLV IRHEGCGVLT LKAFNASFVI KEFGLTITVL  120
SPAEIENAFA RKPQFIVPLQ RSFMEKMPIP PEFLQRGYIS EEDLNRPRPI ATFLTSWHIE  180
LKKDGPNVFF TGSEWPKFLA YFEIAETDVL LIKYQGCMNF SFETFQNGNN ENIEEKISSS  240
QQSEQSPAAQ CQEDEHVSTR RRTQSNGISM KQASTFLKNY ILVIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181880.10.0putative B3 domain-containing protein Os04g0346900 isoform X3
TrEMBLA0A3B6KSR20.0A0A3B6KSR2_WHEAT; Uncharacterized protein
TrEMBLA0A446TLJ80.0A0A446TLJ8_TRITD; Uncharacterized protein
STRINGTraes_5DL_DC941F119.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]