PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_CACDF70D6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 266aa MW: 29906.3 Da PI: 7.7456

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_CACDF70D6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.3	8.6e-30	36	141	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae++ +++ e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F Traes_5DL_CACDF70D6.1 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHF 123 99**************************87445557778999****************************************** PP EE-SS..SEE..EEEEE- CS B3 83 kldgr..sefelvvkvfr 98 ++++ ++ +l+++ +r Traes_5DL_CACDF70D6.1 124 ERVRGlgTGDRLFIGCRR 141 *88655455556666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-39	30	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-28	33	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.56E-28	34	128	No hit	No description
SMART	SM01019	3.0E-23	36	142	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.366	36	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-27	36	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI 120 VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNA GEHQPWSPMC YSTSGSYPSS 180 PANSYAYRRS VEQDHSDMLH AGESQREADA KSSTASAPPS RRLRLFGVNL DCGPEPEAEA 240 ITPMYGYTHQ SPYAAVATVP SYWGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-50	31	142	3	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-50	31	142	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185469.1	0.0	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-132	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A3B6MP12	0.0	A0A3B6MP12_WHEAT; Uncharacterized protein
TrEMBL	A0A453K981	0.0	A0A453K981_AEGTS; Uncharacterized protein
STRING	Traes_5DL_CACDF70D6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	6e-55	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]