PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_BB02CB81C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 331aa    MW: 36042.2 Da    PI: 8.1503
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_BB02CB81C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.32.7e-3127854129
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd+e+++   +elvg+kktLvfy+grap+g k++Wvmhe+rle
  Traes_5DL_BB02CB81C.2   2 GEKEWYFFVHKDLKYPTGSRANRATKEGYWKATGKDREIFKPrARELVGMKKTLVFYTGRAPRGAKSEWVMHEFRLE 78 
                            578*************************************9867788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.3921101IPR003441NAC domain
SuperFamilySSF1019412.22E-352101IPR003441NAC domain
PfamPF023651.5E-14677IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGEKEWYFFV HKDLKYPTGS RANRATKEGY WKATGKDREI FKPRARELVG MKKTLVFYTG  60
RAPRGAKSEW VMHEFRLEGK SRGQTMNNPK DEWVVCKVFN KKGEAKATRA ADVDAEYSAV  120
TTPNASSVVD AGEGAGDFTD SMFTIDPLCY IPNSDEYTSN QLPAKTTTTT TTNSAAPPYN  180
ADYYYPSVPT TAGSFNVMSN YSLTNAPSNA QTSTAMASSV PATSGSSWQH MLMNTAPHGM  240
MGRRSYDVNL HEQQAIMLRA LGGVVGAQNF GEPEKGLQLP SPAVTAGSVL PQQGKLGSYD  300
DGEFPYGNYD LASAAMNGRP AADNNLGARF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-29110668170NO APICAL MERISTEM PROTEIN
1ut4_B2e-29110668170NO APICAL MERISTEM PROTEIN
1ut7_A2e-29110668170NO APICAL MERISTEM PROTEIN
1ut7_B2e-29110668170NO APICAL MERISTEM PROTEIN
3swm_A2e-29110671173NAC domain-containing protein 19
3swm_B2e-29110671173NAC domain-containing protein 19
3swm_C2e-29110671173NAC domain-containing protein 19
3swm_D2e-29110671173NAC domain-containing protein 19
3swp_A2e-29110671173NAC domain-containing protein 19
3swp_B2e-29110671173NAC domain-containing protein 19
3swp_C2e-29110671173NAC domain-containing protein 19
3swp_D2e-29110671173NAC domain-containing protein 19
3ulx_A2e-29110466171Stress-induced transcription factor NAC1
4dul_A2e-29110668170NAC domain-containing protein 19
4dul_B2e-29110668170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275730.0HM027573.1 Triticum aestivum NAC transcription factor 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166976.10.0NAC domain-containing protein 77-like
RefseqXP_020166977.10.0NAC domain-containing protein 77-like
SwissprotQ5CD171e-56NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A3B6MPB80.0A0A3B6MPB8_WHEAT; Uncharacterized protein
STRINGTraes_5DL_BB02CB81C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.12e-44NAC domain containing protein 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]