PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_B89CD8432.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 1462aa    MW: 164812 Da    PI: 7.5842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_B89CD8432.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.54e-133109214611373
                   GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86  
                             l++lL++cA+av+++d+++++ ++ +ls+++s +gdp qRl ay++e+L arla+s++++ykal+++e +   ss+ ++++++++e
  Traes_5DL_B89CD8432.1 1092 LKKLLISCARAVEAKDMSAVDMMVPELSKMVSVSGDPHQRLGAYIVEGLVARLASSGHSIYKALKCKEPR---SSDLMSYMHFLYE 1174
                             5799*****************************************************************9...999********** PP

                   GRAS   87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 
                             ++P++kf+++ aN aI eav+ge+++HiiDf+isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A 
  Traes_5DL_B89CD8432.1 1175 ACPYFKFGYMSANGAIAEAVKGEDMIHIIDFGISQGAQWVPLLQALATRPGGPPTVRITGIDDSLSAyaRGGGLDLVGRRLSHIAG 1260
                             ***************************************************************877788999************** PP

                   GRAS  171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 
                              ++vpfef+  va + ++++  +L v pgEalaVn+ l+lh+++de vs++++rd++L+lvkslsPkvv++veqe+++n+ +F +r
  Traes_5DL_B89CD8432.1 1261 LCKVPFEFHS-VAVAGDEVKEGHLMVIPGEALAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVVTLVEQELNTNTVPFKQR 1345
                             **********.7999*********************************************************************** PP

                   GRAS  257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 
                             f+e+l+yy+a+f+s++ +lpr+++eri++E+++l+reivn+vaceg er+erhe ++kW+ rl+++GF+p pls+ +++++++ll+
  Traes_5DL_B89CD8432.1 1346 FAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNIVACEGVERVERHEVFGKWKGRLMMVGFRPCPLSSLVNATIRTLLQ 1431
                             ************************************************************************************** PP

                   GRAS  343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                              ++ + y++ e++g l+lgWk++pLv+ SaW
  Traes_5DL_B89CD8432.1 1432 SYSAN-YQLAERDGVLYLGWKNKPLVVSSAW 1461
                             ***77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525403.5E-52335591IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.5E-51337617IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3004.1E-17337506IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.2E-9356371No hitNo description
PRINTSPR003642.2E-9428442No hitNo description
PRINTSPR003642.2E-9525539No hitNo description
SuperFamilySSF520584.93E-216561031IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.3E-7727844IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.3E-78941005IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5098568.50410661443IPR005202Transcription factor GRAS
PfamPF035141.4E-13010921461IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1462 aa     Download sequence    Send to blast
METGTSILAL KRKGEEWSSA LQERGPKHSF FLAQKHSGQV TSLVDLADLE KGLTDNRSIN  60
DSRFSSTSFP TAGDVLGQHT SVFFDPTKGL WKCRHCDWTH RLISPCRNVD FPNYQRCGQV  120
TMEAPFGMGS LLGKLRMLLA PQECRLPSRV KDRMHLLKED VEDLSEYLGE MAEAEDLPLT  180
AKRWMKEARE LAYDMEDNMD MCLQPARASI NTTRFICKIG RHVKIPKRLF SKRRLPKGLK  240
WHKQIAYIAQ VPAEHSGKTR SVCKAIRVVI IRLPKRLKWY KHIMELISDF RMYIQEAIER  300
HERYELHRCS TFRRRFLPAN HTLLTAYGGI ADMVIDDRVS EFIDSLDNDG DQQLKVVSVL  360
GPGCLGKTAL AQVLYNKFGG QFDCTAFVRV SKRPDVVRLL REMLTQVQGQ QPTEYSKELD  420
LAYSIREHLQ DKRYLIIIDD IWTASAWDII SDAFPKGNHG SRVITTTQME EVALTCCCYY  480
SEHIFEMRPL DHDHSRKLFF SILFGSESDC PKELKEVTNK IVELCGGLPL ATISIASLLS  540
SQPVIKMDLL TYLCDSLSSC LWISPSEGTR QALNLSYNNL PHYLKICLLC LNMYPEGHTI  600
WKDDLVKQWV AEGFIHTTEG QDMEKVAASY FDELINRRFI QTLCSKYNNE VLSCTVHDVV  660
HDLIADKCSE ENFNMVIDSS RRNVALSQKV RRLSLLFGDA KYMKTPANMR RSQVRSLTIF  720
GLFESMPSIS EFKLLRVLNL QLSCYGDRNT INLTGISDLF QLRYLKIACD ICIQLPNHML  780
GLQCLETLVL DSEVTAVPWD IIHLPSLLHL SLLVMTNLLD WIGSMRLIGK LNNLRDLHLT  840
YSVPSSDHLK RSMEALGSQL SGHANLKTLA LVNGPCHKNA FVCDALKVTV SWEGLVPPPV  900
LEVFEWSLHS CVLSRIPKWI GELGKLRILK IAVRDLPRDG IDAVRGLPSL TALSLYLQTA  960
AVERIVFDKV GFSVLNYFNL RCSVPCLKFE ANAMPNLRKL KLGFNAPRAR MDQHGASTAI  1020
SIDHLPSLKE ICAKIRGACA DTESALATAI SNHPSNPMIN VQLVDYTFDG DELTHENKEQ  1080
DEVLVEGQDG YLKKLLISCA RAVEAKDMSA VDMMVPELSK MVSVSGDPHQ RLGAYIVEGL  1140
VARLASSGHS IYKALKCKEP RSSDLMSYMH FLYEACPYFK FGYMSANGAI AEAVKGEDMI  1200
HIIDFGISQG AQWVPLLQAL ATRPGGPPTV RITGIDDSLS AYARGGGLDL VGRRLSHIAG  1260
LCKVPFEFHS VAVAGDEVKE GHLMVIPGEA LAVNFTLELH HIPDEAVSTA NHRDRILRLV  1320
KSLSPKVVTL VEQELNTNTV PFKQRFAETL DYYTAIFESI DLTLPRDDRE RINMEQHCLA  1380
REIVNIVACE GVERVERHEV FGKWKGRLMM VGFRPCPLSS LVNATIRTLL QSYSANYQLA  1440
ERDGVLYLGW KNKPLVVSSA WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-65109614628375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155316.10.0putative disease resistance RPP13-like protein 2
TrEMBLA0A3B6MVY80.0A0A3B6MVY8_WHEAT; Uncharacterized protein
STRINGTraes_5DL_B89CD8432.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-165scarecrow-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]