PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_B25AF1570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 290aa MW: 31192.8 Da PI: 7.2574 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.5 | 3.3e-13 | 63 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I +s +k +lg+f + +Aa+a++ a+ k++g Traes_5DL_B25AF1570.1 63 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 112 9***************999754...5**********99************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.15 | 1 | 26 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-5 | 2 | 27 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-5 | 2 | 27 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.89E-13 | 61 | 122 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 61 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.149 | 62 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-17 | 62 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-29 | 62 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-8 | 63 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEEKAARAYD LAALKYWGAS THINFPVEDY QEELEVMKNM TRQEYVAHLR RKSSGFSRGA 60 SMYRGVTRHH QQGRWQARIG RVSGNKDLYL GTFSAEADAA EAYDVAAIKF RGLNAVTNFD 120 INRYDVDKIM ESSTLLPGDQ VRRRKDGPDE SAAVVASAAA ALVQAGSAAD YWRQPAAVTT 180 DDQSRHHLDL LSSESFSLLR GVVSVDGDAA GAQQGQGNRM SGASSLATSL SNSREQSPDQ 240 GGGLAMLFAR PAAPKLASSL PMGTWVSSPA PARPGVSVAH MPVFAAWADA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 0.0 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156625.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q84Z02 | 1e-123 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A453LWU8 | 0.0 | A0A453LWU8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_B25AF1570.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 3e-73 | AP2 family protein |
Publications ? help Back to Top | |||
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