PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_A39210547.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 677aa    MW: 75452.3 Da    PI: 5.3533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_A39210547.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.73.5e-1263096772374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++++++c +a +++d   ++ l+++l++l+s +gdpmqRl ay++e+L ar ++s+s+lyk+l+ +e +   sse +++++l++e++P
  Traes_5DL_A39210547.2 309 KQVIIACGKAAAENDI-HTEVLISELRQLVSISGDPMQRLGAYMLEGLVARFSSSGSKLYKSLKYKEPT---SSELMSYMHLLYEMCP 392
                            7889999999888776.689************************************************9...9*************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                            ++ f+++ aN aI ea++ge+ vHiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s   +   l  +g rL+++ +++gvp
  Traes_5DL_A39210547.2 393 FYMFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITIIQALAARSGGPPCLRITGIDDSNSAyaRGGGLDMVGTRLHSVSASCGVP 480
                            ************************************************************988899999******************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            fefn+ v+ + +++ le+L+++pgE+++Vn+++qlh+++desvs+e++rd++++++ksl P+vv++veqe+++n+++F++r le+l+y
  Traes_5DL_A39210547.2 481 FEFNA-VHAASHEVYLEHLDIRPGEVIVVNFAYQLHHTPDESVSTENHRDRIIRMIKSLAPRVVTLVEQESNTNTTPFFQRYLETLDY 567
                            *****.688999999************************************************************************* PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            y+a+f+ +++ lpr++++ri+ E+++l+r+i +++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++k+ll  ++ + yr+
  Traes_5DL_A39210547.2 568 YTAIFEIIDVALPRDDKTRISTEQHCLARDIISLIACEGAERVERHEVFGKWKARFAMAGFRPYPLSSLVNNTIKTLLDGYH-RCYRL 654
                            **********************************************************************************.77*** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                            ee++g l+lgWk+r Lv+ SaWr
  Traes_5DL_A39210547.2 655 EERDGVLYLGWKSRMLVVSSAWR 677
                            **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078877.4E-1633106IPR012416CALMODULIN-BINDING PROTEIN60
PROSITE profilePS5098563.766282658IPR005202Transcription factor GRAS
PfamPF035141.2E-123309677IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MFMWTIISAS TSLFSEKTLN FWQMTYWHEG GLSTTVTHAT TCDPGVEIYS YGVAEENCEL  60
LFTYFYDLVG VLTNGDYVPA SDLDQFQQLK VKSWKLPAFK KFEERENSGV LIPDYLMMNG  120
CPVRAVSLNN DAGPSVQART IWQYPNDMAA QHVFSDRHPL NGFSRAAVLS NNGAGPSNQG  180
TLPFSQPTYE QTVHQGNGQH DPSMAQNGIP DYLPQGNILN DQGSLSAQPT PFHNFLPVPA  240
DEMITGASLT DEQTEYFSTT DSLGTLENAI PGPELDISCD SPKSLLQAKN PLKQGNWRQL  300
LGINTGDLKQ VIIACGKAAA ENDIHTEVLI SELRQLVSIS GDPMQRLGAY MLEGLVARFS  360
SSGSKLYKSL KYKEPTSSEL MSYMHLLYEM CPFYMFGYMS ANGAIAEAIK GENFVHIIDF  420
QIAQGSQWIT IIQALAARSG GPPCLRITGI DDSNSAYARG GGLDMVGTRL HSVSASCGVP  480
FEFNAVHAAS HEVYLEHLDI RPGEVIVVNF AYQLHHTPDE SVSTENHRDR IIRMIKSLAP  540
RVVTLVEQES NTNTTPFFQR YLETLDYYTA IFEIIDVALP RDDKTRISTE QHCLARDIIS  600
LIACEGAERV ERHEVFGKWK ARFAMAGFRP YPLSSLVNNT IKTLLDGYHR CYRLEERDGV  660
LYLGWKSRML VVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-563106776375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164222.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6N0390.0A0A3B6N039_WHEAT; Uncharacterized protein
STRINGTraes_5DL_A39210547.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-180GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]