PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_9CC4EC839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28437.5 Da PI: 9.5572 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.2 | 1.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +iifs++gklye+s+ Traes_5DL_9CC4EC839.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 109.6 | 3.4e-36 | 78 | 172 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + +s e++ + ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+Kn+l++e+i+elqkke++lqeen Traes_5DL_9CC4EC839.1 78 KVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKNQLMHESISELQKKERSLQEEN 165 555667778889**************************************************************************** PP K-box 92 kaLrkkl 98 k L+k++ Traes_5DL_9CC4EC839.1 166 KVLQKEI 172 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.941 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.27E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-31 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.871 | 88 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIIFST KGKLYEFSTE 60 SCMDKILERY ERYSYAEKVL VSSESEIQGN WCHEYRKLKA KVETIQKCQK HLMGEDLESL 120 NLKELQQLEQ QLESSLKHIR SRKNQLMHES ISELQKKERS LQEENKVLQK EIPVPSPQLV 180 EKQKAQAAQQ DQTQPQTSSS SSSFMMRDAP PAAATSIHPA AAGERAGDAA VQPQAPPRTG 240 LPLWMVSHIN G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007504 | 0.0 | AB007504.1 Triticum aestivum TaMADS#11 mRNA for MADS box transcription factor, complete cds. | |||
GenBank | AY280870 | 0.0 | AY280870.1 Triticum aestivum MADS-box protein TaVRT-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198021.1 | 1e-148 | MADS-box transcription factor 14-like | ||||
Swissprot | Q10CQ1 | 1e-125 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A3B6MZF0 | 0.0 | A0A3B6MZF0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LU16 | 0.0 | A0A453LU16_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_9CC4EC839.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-77 | MIKC_MADS family protein |