PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_98FA0887C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 19377.7 Da PI: 7.7795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ Traes_5DL_98FA0887C.1 77 YACRRCGKRFAVRGDWRTHEKNC 99 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-7 | 63 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.46E-7 | 63 | 97 | No hit | No description |
PROSITE profile | PS50157 | 8.704 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MQMHMWGHGS QYRKGSESLR GAVTVGTAAP PPSLMRLPCY CCAEGCRNNI DHPRARPLKD 60 FRTLQTHYRR KHGARPYACR RCGKRFAVRG DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH 120 VRSFGGGHAP HIIESVAVDE DEDEDDEHDD GDLHLYDENG NAGDGSDMVL L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373299 | 0.0 | AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172443.1 | 1e-125 | zinc finger protein WIP6-like | ||||
Swissprot | Q8W030 | 2e-74 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A3B6MPB2 | 1e-124 | A0A3B6MPB2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_46BDE583B.1 | 1e-124 | (Triticum aestivum) | ||||
STRING | Traes_5DL_98FA0887C.1 | 1e-125 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 2e-76 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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