PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_8FD0CF6B9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 775aa MW: 86992.3 Da PI: 7.2403 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 383.4 | 2.7e-117 | 400 | 771 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+a++l++ ++ Traes_5DL_8FD0CF6B9.2 400 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYFAAC 484 5789************************************************************999999...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ ++sh++ Nq+Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp lRiTg++ pe+g +e++eetg+rLa++A++++v Traes_5DL_8FD0CF6B9.2 485 PFKRLSHFLSNQTILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFEV 572 ****************************************************************9*********************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfe++ +a+++e+++ e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal Traes_5DL_8FD0CF6B9.2 573 PFEYHG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALF 659 ******.7******************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 ++salfd+lea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++ +ak ++ ++ + + Traes_5DL_8FD0CF6B9.2 660 HFSALFDMLEATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFV 747 ***********************************************************************************888** PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 ++e+sg+l++gWk+r +++++ W+ Traes_5DL_8FD0CF6B9.2 748 IDEDSGWLLQGWKGRIIYAITTWK 771 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.636 | 374 | 751 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-115 | 400 | 771 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence Send to blast |
MTSTPQPPRD RAHAAPPAQD LTGLGLAAAR SLRHRPPRQG SMPSAGSVEH QTISGSLIHS 60 MIQFCGAPEY FMFNDPQPVI PHHVAAEPSH NAPVATLSRA TNTETDNPED WEFISDESLN 120 YISRMLMEED IDEKVSVYQE ESATLRATAK PFYDILGHKF PPSPDRTLTT WSLDSPSESS 180 SSGHAQSLSS VGTSGSIGGA VHSNQCHNVG HSEQLEAYRG LCGRSSQPLV APPSGVSDAA 240 ESLEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGG DKLVIDLEAA GVSKPQEAVK 300 DIPFNVSRTE VLKAKKNRQS EDLDLIEGRN IKQSAFCSDE PDDWVEMFDD LFRQTEKKAT 360 VLREKMRSEA SKNSQVIQTK GTTGVKTRGR KPTKNDVVDL RTILIHCAQA VAADDRRTAN 420 ELLKQIKQHS KVNGDGSQRL AFCFAQGLEA RLAGTGSQQY HRLVAKRTTA SDMLKAYHLY 480 FAACPFKRLS HFLSNQTILS MTKNAKKVHI IDFGIYFGLQ WPCLIRRLSK REGGPPILRI 540 TGIDVPEPGF RPTERIEETG QRLAEYAKKF EVPFEYHGIA SKWETIRAED LKVGKDEVVI 600 VNCLYRFRNL IDETVAVDSP RNRVLNTIRQ VNPAIFIHGI VNGSYSVPFF ITRFREALFH 660 FSALFDMLEA TVPRDDDQRR LIERDLFGRE ALNVIACEGS DRVERPETYK QWQVRNLRAG 720 FVQSPLNQDI VIKAKDKVKD IYHKDFVIDE DSGWLLQGWK GRIIYAITTW KHNNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-48 | 404 | 771 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362796 | 0.0 | AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184239.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_020184240.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_020184241.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3B6MPG0 | 0.0 | A0A3B6MPG0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_8FD0CF6B9.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-171 | GRAS family protein |
Publications ? help Back to Top | |||
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