PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_8FD0CF6B9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 775aa    MW: 86992.3 Da    PI: 7.2403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_8FD0CF6B9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.42.7e-1174007711374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++ L++cA+av+++d + a++lL+++++++  +gd  qRla++f+++L+arla+++s+ y+ l +++t+    s+ l+a++l++ ++
  Traes_5DL_8FD0CF6B9.2 400 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYFAAC 484
                            5789************************************************************999999...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P+ ++sh++ Nq+Il  ++++++vHiiDf+i  GlQWp+L++ L++R++gpp lRiTg++ pe+g   +e++eetg+rLa++A++++v
  Traes_5DL_8FD0CF6B9.2 485 PFKRLSHFLSNQTILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFEV 572
                            ****************************************************************9*********************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfe++  +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal 
  Traes_5DL_8FD0CF6B9.2 573 PFEYHG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALF 659
                            ******.7******************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            ++salfd+lea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + 
  Traes_5DL_8FD0CF6B9.2 660 HFSALFDMLEATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFV 747
                            ***********************************************************************************888** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            ++e+sg+l++gWk+r +++++ W+
  Traes_5DL_8FD0CF6B9.2 748 IDEDSGWLLQGWKGRIIYAITTWK 771
                            ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.636374751IPR005202Transcription factor GRAS
PfamPF035149.2E-115400771IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MTSTPQPPRD RAHAAPPAQD LTGLGLAAAR SLRHRPPRQG SMPSAGSVEH QTISGSLIHS  60
MIQFCGAPEY FMFNDPQPVI PHHVAAEPSH NAPVATLSRA TNTETDNPED WEFISDESLN  120
YISRMLMEED IDEKVSVYQE ESATLRATAK PFYDILGHKF PPSPDRTLTT WSLDSPSESS  180
SSGHAQSLSS VGTSGSIGGA VHSNQCHNVG HSEQLEAYRG LCGRSSQPLV APPSGVSDAA  240
ESLEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGG DKLVIDLEAA GVSKPQEAVK  300
DIPFNVSRTE VLKAKKNRQS EDLDLIEGRN IKQSAFCSDE PDDWVEMFDD LFRQTEKKAT  360
VLREKMRSEA SKNSQVIQTK GTTGVKTRGR KPTKNDVVDL RTILIHCAQA VAADDRRTAN  420
ELLKQIKQHS KVNGDGSQRL AFCFAQGLEA RLAGTGSQQY HRLVAKRTTA SDMLKAYHLY  480
FAACPFKRLS HFLSNQTILS MTKNAKKVHI IDFGIYFGLQ WPCLIRRLSK REGGPPILRI  540
TGIDVPEPGF RPTERIEETG QRLAEYAKKF EVPFEYHGIA SKWETIRAED LKVGKDEVVI  600
VNCLYRFRNL IDETVAVDSP RNRVLNTIRQ VNPAIFIHGI VNGSYSVPFF ITRFREALFH  660
FSALFDMLEA TVPRDDDQRR LIERDLFGRE ALNVIACEGS DRVERPETYK QWQVRNLRAG  720
FVQSPLNQDI VIKAKDKVKD IYHKDFVIDE DSGWLLQGWK GRIIYAITTW KHNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-484047718375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627960.0AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184239.10.0scarecrow-like protein 9
RefseqXP_020184240.10.0scarecrow-like protein 9
RefseqXP_020184241.10.0scarecrow-like protein 9
TrEMBLA0A3B6MPG00.0A0A3B6MPG0_WHEAT; Uncharacterized protein
STRINGTraes_5DL_8FD0CF6B9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-171GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]