PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_8F7AC72B0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 865aa    MW: 93935.9 Da    PI: 6.5061
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_8F7AC72B0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-183794457
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++t+eq+++Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Traes_5DL_8F7AC72B0.2 37 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 94
                           6789****************************************************97 PP
2START174.85.5e-551853922204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l+ i +g 
  Traes_5DL_8F7AC72B0.2 185 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGn 271
                            68999*****************************************************.8888888888******************* PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvd
  Traes_5DL_8F7AC72B0.2 272 gGTIELIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVD 359
                            *****************999*****************************999999********************************* PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                            l++++++++lr+l++s  + ++k++ a+l++ +
  Traes_5DL_8F7AC72B0.2 360 LDAWSVPEVLRPLYESPKILAQKMTIAALRHIR 392
                            ****************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3213195IPR001356Homeobox domain
SMARTSM003892.6E-153399IPR001356Homeobox domain
SuperFamilySSF466891.11E-163598IPR009057Homeodomain-like
CDDcd000864.24E-163696No hitNo description
PfamPF000461.1E-153794IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-183894IPR009057Homeodomain-like
CDDcd146862.44E-688127No hitNo description
PROSITE profilePS5084827.299175375IPR002913START domain
CDDcd088751.39E-68179395No hitNo description
Gene3DG3DSA:3.30.530.206.6E-24183375IPR023393START-like domain
SMARTSM002343.1E-48184394IPR002913START domain
SuperFamilySSF559616.73E-39185395No hitNo description
PfamPF018528.5E-53185392IPR002913START domain
PfamPF086708.5E-49719864IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MAGAMVVHGH GGGGRDRDRD RSSPGGSGAP QVDTGKYVRY TPEQVDALER VYSECPKPSS  60
LRRQQLIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND  120
RLQKQVSRLV YENGYMRTHL NNPSVATTDT SCESVVTSGQ HQQQQNAVVP RPQRDANNPA  180
GLLAIAEETL AEFLSKATGT AVDWVQMVGM KPGPDSIGII AVSHNCSGVA ARACGLVSLE  240
PTKVAEILKD RPSWYRDCRC VDVLQIIPTG NGGTIELIYM QTYAPTTLAA PRDFWILRYT  300
SGLEDGSLVI CERSLTQATG GPSGPNTPNF VRAEVLPSGY LIRPCEGGGS MIHIVDHVDL  360
DAWSVPEVLR PLYESPKILA QKMTIAALRH IRQIAHESSG EMPYGGGRQP AVLRTFSQRL  420
SRGFNDAVNG FLDDGWSLMS SDGAEDVTIA INSSPNKLAG SHVNPSQMFT AIGGGVLCAK  480
ASMLLQNVPP ALLVRFLREH RSEWADPGVD AYSAAALRAS PYAVPGLRAS GFMGSQVILP  540
LAHTLEHEEF LEVIRLEGHS LCHDEVVLSR DMYLLQLCSG VDENAAGACA QLVFAPIDES  600
FADDAPLLPS GFRVIPLDAK TDAPSATRTL DLASTLEVGP GGTRAPSDAS STSNTRSVLT  660
IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS RPGGQLEMKN PPGSPEAHTL  720
ARWIGRSYRF HTGAELLCTE SQSADASLKA LWQHSDSIMC CSLKVGCAAP VFTFANQAGL  780
DMLETTLIAL QDISLEKILD DDGRKALCSE FPKIMQQGFA YLPGGVCVSS MGRPVSYEQA  840
VAWKVLGDDD APHCLAFMFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3642150.0AK364215.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192001.10.0homeobox-leucine zipper protein HOX32
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A453LQ740.0A0A453LQ74_AEGTS; Uncharacterized protein
STRINGTraes_5DL_8F7AC72B0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]