PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_898B0A5A7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 183aa MW: 19384.7 Da PI: 8.401

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_898B0A5A7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.5	8.1e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Cr +L+YP GApsV+Ca+C ++ Traes_5DL_898B0A5A7.1 7 CHRCRRVLAYPSGAPSVCCAMCRAI 31 **********************986 PP
2	zf-LSD1	39.7	8.1e-13	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV Traes_5DL_898B0A5A7.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP
3	zf-LSD1	44.8	2e-14	86	109	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd Traes_5DL_898B0A5A7.1 86 CGRCRTTLMYPHGAPSVKCAICDY 109 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.4E-10	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-9	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-14	45	75	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	48	72	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.7E-12	83	111	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.4E-14	86	110	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPVNN IAHVNCGRCR TTLMYPHGAP SVKCAICDYI TNTGINTMSP 120 APCPRPTSNE SAYNASSASV VCPQTCIPTP QPQNVTVVVE NPMTVDEKGK LVSNVVVGIT 180 PGK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU545234	0.0	EU545234.1 Hordeum vulgare subsp. vulgare clone SMEb0007a07 LSD1-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196161.1	1e-120	protein LOL3-like isoform X1
Swissprot	Q6ASS2	1e-99	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A453LR65	1e-127	A0A453LR65_AEGTS; Uncharacterized protein
STRING	Traes_5DL_898B0A5A7.1	1e-128	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-48	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]