PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_88247E2B8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 541aa    MW: 59900.5 Da    PI: 6.0279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_88247E2B8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.71.6e-1291715401373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++++++c +av+++d+ +++ l+++l +l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e +   sse +++++l+ e++
  Traes_5DL_88247E2B8.1 171 LKQVIIACGKAVAANDMYATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---SSELMSYMHLLCEIC 255
                            57899****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI ea++ge+ vHiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s   +   l  +g rL+++ +++g+
  Traes_5DL_88247E2B8.1 256 PFYKFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITIIQALAARSGGPPCLRITGIDDSNSAyaRGGGLDMVGTRLHSISASCGL 343
                            *************************************************************988899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfefn+ v+ + +++ +++L+++pgEa++Vn+++qlh+++desvs+e++rd++++++kslsP+vv++veqe+++n++ Fl r le+l+
  Traes_5DL_88247E2B8.1 344 PFEFNA-VHAASHEVYIQHLDTRPGEAIVVNFAYQLHHTPDESVSVENHRDRIIRMIKSLSPRVVTLVEQESNTNTSAFLPRYLETLD 430
                            ******.688999999************************************************************************ PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s+++ lpr+++ ri+ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++k+ll  ++s  yr
  Traes_5DL_88247E2B8.1 431 YYTAMFESIDVALPRDDKRRISTEQHCVARDIVNLIACEGAERVERHEVFGKWKARFAMAGFRPYPLSSVVNNTIKTLLDSYHSC-YR 517
                            ***********************************************************************************55.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            +ee++g l+lgWk+r Lv+ SaW
  Traes_5DL_88247E2B8.1 518 LEERDGVLYLGWKGRVLVVSSAW 540
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.546145522IPR005202Transcription factor GRAS
PfamPF035145.4E-127171540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSAKASERTY RCSDDSQMAY YNNSVPLAEN GRFYMMQNHL DVHYTSSGDG SQKISSNPQV  60
FEAQYCTLES SSANGVYPTQ SSTSSHSISP ISGSPLSQND SHSYHTYDSP PTASCVTEIP  120
DFQSKLKELE NAILGPELDI ASDSPESLLQ ANHPLKQDNW RQLLGINTGD LKQVIIACGK  180
AVAANDMYAT ELLISELGQL VSVSGDPMQR LGAYMLEGLV ARLSFSGSKL YKSLKCKEPT  240
SSELMSYMHL LCEICPFYKF GYMSANGAIA EAIKGENFVH IIDFQIAQGS QWITIIQALA  300
ARSGGPPCLR ITGIDDSNSA YARGGGLDMV GTRLHSISAS CGLPFEFNAV HAASHEVYIQ  360
HLDTRPGEAI VVNFAYQLHH TPDESVSVEN HRDRIIRMIK SLSPRVVTLV EQESNTNTSA  420
FLPRYLETLD YYTAMFESID VALPRDDKRR ISTEQHCVAR DIVNLIACEG AERVERHEVF  480
GKWKARFAMA GFRPYPLSSV VNNTIKTLLD SYHSCYRLEE RDGVLYLGWK GRVLVVSSAW  540
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-581735406374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6N0100.0A0A3B6N010_WHEAT; Uncharacterized protein
STRINGTraes_5DL_88247E2B8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]